Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C7M56_RS18380 Genome accession   NZ_CP027777
Coordinates   3906256..3907209 (-) Length   317 a.a.
NCBI ID   WP_159036097.1    Uniprot ID   -
Organism   Clostridium botulinum strain Mfbjulcb8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3901256..3912209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M56_RS18355 (C7M56_18470) - 3902343..3903344 (-) 1002 WP_159036094.1 AraC family transcriptional regulator -
  C7M56_RS18365 (C7M56_18480) - 3903546..3904490 (-) 945 WP_159036095.1 siderophore ABC transporter substrate-binding protein -
  C7M56_RS18370 (C7M56_18485) - 3904564..3905319 (-) 756 WP_011948720.1 ATP-binding cassette domain-containing protein -
  C7M56_RS18375 (C7M56_18490) - 3905316..3906266 (-) 951 WP_159036096.1 iron chelate uptake ABC transporter family permease subunit -
  C7M56_RS18380 (C7M56_18495) ceuB 3906256..3907209 (-) 954 WP_159036097.1 ABC transporter permease Machinery gene
  C7M56_RS18385 (C7M56_18500) - 3907455..3908213 (+) 759 WP_159036098.1 AraC family transcriptional regulator -
  C7M56_RS18390 (C7M56_18505) orr 3908601..3909668 (+) 1068 WP_159036099.1 ornithine racemase Orr -
  C7M56_RS18395 (C7M56_18510) - 3909894..3910460 (+) 567 WP_159036100.1 ECF transporter S component -
  C7M56_RS18400 (C7M56_18515) - 3910463..3911896 (+) 1434 WP_159036101.1 energy-coupling factor transporter ATPase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34843.18 Da        Isoelectric Point: 9.9543

>NTDB_id=280540 C7M56_RS18380 WP_159036097.1 3906256..3907209(-) (ceuB) [Clostridium botulinum strain Mfbjulcb8]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLAALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSIVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=280540 C7M56_RS18380 WP_159036097.1 3906256..3907209(-) (ceuB) [Clostridium botulinum strain Mfbjulcb8]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGCTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAAGATTTTTCTAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTTTTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment