Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4L56_RS03555 Genome accession   NZ_CP032898
Coordinates   711684..713204 (+) Length   506 a.a.
NCBI ID   WP_139518400.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-C-EK2     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 706684..718204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L56_RS03525 moaC 706838..707314 (+) 477 WP_139518396.1 cyclic pyranopterin monophosphate synthase MoaC -
  D4L56_RS03530 hpaA 707427..708209 (+) 783 WP_139518397.1 flagellar sheath lipoprotein HpaA -
  D4L56_RS03535 - 708238..709074 (+) 837 WP_139518398.1 outer membrane protein -
  D4L56_RS03540 tig 709186..710541 (+) 1356 WP_139518399.1 trigger factor -
  D4L56_RS03545 clpP 710562..711149 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4L56_RS03550 def 711154..711678 (+) 525 WP_001185873.1 peptide deformylase -
  D4L56_RS03555 comM 711684..713204 (+) 1521 WP_139518400.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4L56_RS03560 - 713229..715289 (+) 2061 WP_139518401.1 heavy metal translocating P-type ATPase -
  D4L56_RS03565 - 715333..716421 (+) 1089 WP_371856217.1 restriction endonuclease subunit S -
  D4L56_RS08365 - 716466..716615 (+) 150 WP_371856223.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57124.19 Da        Isoelectric Point: 8.6897

>NTDB_id=280486 D4L56_RS03555 WP_139518400.1 711684..713204(+) (comM) [Helicobacter pylori strain 479-C-EK2]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIAYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=280486 D4L56_RS03555 WP_139518400.1 711684..713204(+) (comM) [Helicobacter pylori strain 479-C-EK2]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCTCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCCAAAA
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAAGGGCAAGCTGTTGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGTTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGCATACGACAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGTTTGTGCGGGAATTTACTCAGCGCGACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAACCTTTTTTAGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAGTTGGTATTATTAGCTTTCAAACAACA
AAAGTTAAGAAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTTTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.826

100

0.978
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment