Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4L56_RS01670 Genome accession   NZ_CP032898
Coordinates   324887..325936 (-) Length   349 a.a.
NCBI ID   WP_139518166.1    Uniprot ID   -
Organism   Helicobacter pylori strain 479-C-EK2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 319887..330936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L56_RS01645 rpsL 320807..321214 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  D4L56_RS01650 rpsG 321230..321697 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4L56_RS01655 fusA 321709..323787 (+) 2079 WP_000101878.1 elongation factor G -
  D4L56_RS01665 - 324367..324699 (+) 333 WP_139518165.1 flagellar protein -
  D4L56_RS01670 waaF 324887..325936 (-) 1050 WP_139518166.1 lipopolysaccharide heptosyltransferase II Regulator
  D4L56_RS01675 hisS 325998..327326 (+) 1329 WP_139518167.1 histidine--tRNA ligase -
  D4L56_RS01680 asd 327313..328353 (+) 1041 WP_139523640.1 aspartate-semialdehyde dehydrogenase -
  D4L56_RS01685 - 328784..329980 (+) 1197 WP_139523641.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39451.23 Da        Isoelectric Point: 9.7152

>NTDB_id=280479 D4L56_RS01670 WP_139518166.1 324887..325936(-) (waaF) [Helicobacter pylori strain 479-C-EK2]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFVLVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAKAATALLEKGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLLH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHAAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEATHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=280479 D4L56_RS01670 WP_139518166.1 324887..325936(-) (waaF) [Helicobacter pylori strain 479-C-EK2]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTGTCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGTCATGCGATCGCTCCTGCCCCTAAAGAAT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCCAAAGCCGCGACTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTGCTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCCATGCATGCGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTGTTGAACCACCATTTAAGCTGTGCACCTTGTAAAAAGCGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCACTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.572

99.14

0.372