Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   C7K40_RS08055 Genome accession   NZ_CP027771
Coordinates   1586449..1587000 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain DMG1800716     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581449..1592000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K40_RS08020 (C7K40_08015) - 1581453..1582196 (-) 744 WP_011054192.1 class I SAM-dependent methyltransferase -
  C7K40_RS08025 (C7K40_08020) rsfS 1582244..1582597 (-) 354 WP_011017339.1 ribosome silencing factor -
  C7K40_RS08030 (C7K40_08025) yqeK 1582621..1583214 (-) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  C7K40_RS08035 (C7K40_08030) - 1583211..1583843 (-) 633 WP_031488555.1 nicotinate-nucleotide adenylyltransferase -
  C7K40_RS08040 (C7K40_08035) yhbY 1583912..1584220 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  C7K40_RS08045 (C7K40_08040) yqeH 1584245..1585363 (-) 1119 WP_015016688.1 ribosome biogenesis GTPase YqeH -
  C7K40_RS08050 (C7K40_08045) - 1585363..1585890 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  C7K40_RS08055 (C7K40_08050) comX/sigX/comX2/sigX2 1586449..1587000 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=280466 C7K40_RS08055 WP_010921894.1 1586449..1587000(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain DMG1800716]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=280466 C7K40_RS08055 WP_010921894.1 1586449..1587000(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain DMG1800716]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATTTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.