Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C7V31_RS20740 Genome accession   NZ_CP032892
Coordinates   3567472..3568077 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCEC020022     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3562472..3573077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7V31_RS20715 (C7V31_20715) aes 3562509..3563468 (+) 960 WP_000801832.1 acetyl esterase -
  C7V31_RS20720 (C7V31_20720) hemH 3563465..3564427 (-) 963 WP_001250088.1 ferrochelatase -
  C7V31_RS20725 (C7V31_20725) adk 3564663..3565307 (-) 645 WP_001220233.1 adenylate kinase -
  C7V31_RS20735 (C7V31_20735) htpG 3565488..3567362 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  C7V31_RS20740 (C7V31_20740) recR 3567472..3568077 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  C7V31_RS20745 (C7V31_20745) ybaB 3568077..3568406 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  C7V31_RS20750 (C7V31_20750) dnaX 3568459..3570390 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  C7V31_RS20755 (C7V31_20755) apt 3570519..3571070 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  C7V31_RS20760 (C7V31_20760) ybaN 3571223..3571600 (-) 378 WP_001188905.1 DUF454 family protein -
  C7V31_RS20765 (C7V31_20765) priC 3571670..3572197 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  C7V31_RS20770 (C7V31_20770) rsmS 3572211..3572372 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  C7V31_RS28185 - 3572425..3572523 (-) 99 Protein_3413 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=280447 C7V31_RS20740 WP_001195025.1 3567472..3568077(-) (recR) [Escherichia coli strain SCEC020022]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=280447 C7V31_RS20740 WP_001195025.1 3567472..3568077(-) (recR) [Escherichia coli strain SCEC020022]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment