Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C7V31_RS12355 Genome accession   NZ_CP032892
Coordinates   1903204..1903680 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain SCEC020022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898204..1908680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7V31_RS12305 (C7V31_12305) sbmC 1898697..1899170 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  C7V31_RS12310 (C7V31_12310) yeeA 1899368..1900426 (+) 1059 WP_001200905.1 FUSC family protein -
  C7V31_RS12315 (C7V31_12315) tmaR 1900598..1900927 (+) 330 WP_000450409.1 DUF496 family protein -
  C7V31_RS12320 (C7V31_12320) - 1901028..1901210 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C7V31_RS12325 (C7V31_12325) - 1901264..1901410 (+) 147 Protein_1797 transposase domain-containing protein -
  C7V31_RS12330 (C7V31_12330) - 1901699..1901779 (-) 81 Protein_1798 hypothetical protein -
  C7V31_RS12335 (C7V31_12335) yeeW 1901825..1902019 (-) 195 WP_000988599.1 DUF5983 family protein -
  C7V31_RS12340 (C7V31_12340) - 1902081..1902389 (-) 309 Protein_1800 TA system toxin CbtA family protein -
  C7V31_RS12345 (C7V31_12345) cbeA 1902478..1902846 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  C7V31_RS12350 (C7V31_12350) yeeT 1902920..1903141 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  C7V31_RS12355 (C7V31_12355) radC 1903204..1903680 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  C7V31_RS12360 (C7V31_12360) - 1903696..1904175 (-) 480 WP_000860076.1 antirestriction protein -
  C7V31_RS12365 (C7V31_12365) - 1904257..1905078 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  C7V31_RS12375 (C7V31_12375) - 1905299..1905709 (-) 411 WP_000846713.1 hypothetical protein -
  C7V31_RS12380 (C7V31_12380) - 1905725..1906408 (-) 684 WP_000775500.1 hypothetical protein -
  C7V31_RS12385 (C7V31_12385) - 1906544..1907614 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  C7V31_RS12390 (C7V31_12390) - 1907611..1908516 (-) 906 WP_000203535.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=280428 C7V31_RS12355 WP_001186773.1 1903204..1903680(-) (radC) [Escherichia coli strain SCEC020022]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=280428 C7V31_RS12355 WP_001186773.1 1903204..1903680(-) (radC) [Escherichia coli strain SCEC020022]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment