Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C7V31_RS06765 Genome accession   NZ_CP032892
Coordinates   757181..757657 (+) Length   158 a.a.
NCBI ID   WP_072661507.1    Uniprot ID   A0A2I7QH11
Organism   Escherichia coli strain SCEC020022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 752181..762657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7V31_RS06745 (C7V31_06745) - 752598..755444 (+) 2847 WP_064055671.1 Ag43/Cah family autotransporter adhesin -
  C7V31_RS06755 (C7V31_06755) - 755771..756589 (+) 819 WP_001234702.1 DUF932 domain-containing protein -
  C7V31_RS06760 (C7V31_06760) - 756680..757165 (+) 486 WP_072794436.1 antirestriction protein -
  C7V31_RS06765 (C7V31_06765) radC 757181..757657 (+) 477 WP_072661507.1 RadC family protein Machinery gene
  C7V31_RS06770 (C7V31_06770) - 757726..757947 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  C7V31_RS06775 (C7V31_06775) - 758027..758395 (+) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  C7V31_RS06780 (C7V31_06780) cbtA 758485..758868 (+) 384 WP_000854822.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  C7V31_RS06785 (C7V31_06785) - 758859..759347 (+) 489 WP_001177592.1 DUF5983 family protein -
  C7V31_RS06790 (C7V31_06790) - 759359..759556 (+) 198 WP_000839263.1 DUF957 domain-containing protein -
  C7V31_RS06795 (C7V31_06795) - 759653..760498 (+) 846 WP_001280435.1 DUF4942 domain-containing protein -
  C7V31_RS06805 (C7V31_06805) mug 760797..761303 (+) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9858

>NTDB_id=280407 C7V31_RS06765 WP_072661507.1 757181..757657(+) (radC) [Escherichia coli strain SCEC020022]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIADETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=280407 C7V31_RS06765 WP_072661507.1 757181..757657(+) (radC) [Escherichia coli strain SCEC020022]
ATGCAACAACTTTCCTTTCTGCCCGGCGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGATGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I7QH11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392