Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C7V31_RS03200 Genome accession   NZ_CP032892
Coordinates   50589..51065 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain SCEC020022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45589..56065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7V31_RS03155 (C7V31_03155) setC 45732..46916 (-) 1185 WP_001172876.1 sugar efflux transporter -
  C7V31_RS03160 (C7V31_03160) rhuM 47313..47474 (-) 162 Protein_47 RhuM family protein -
  C7V31_RS03170 (C7V31_03170) - 47709..48554 (-) 846 WP_087526014.1 DUF4942 domain-containing protein -
  C7V31_RS03175 (C7V31_03175) - 48639..48836 (-) 198 WP_000772032.1 DUF957 domain-containing protein -
  C7V31_RS03180 (C7V31_03180) - 48856..49344 (-) 489 WP_000761715.1 DUF5983 family protein -
  C7V31_RS03185 (C7V31_03185) - 49341..49718 (-) 378 WP_001094437.1 TA system toxin CbtA family protein -
  C7V31_RS03190 (C7V31_03190) - 49765..50142 (-) 378 WP_072645736.1 type IV toxin-antitoxin system YeeU family antitoxin -
  C7V31_RS03195 (C7V31_03195) - 50305..50526 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  C7V31_RS03200 (C7V31_03200) radC 50589..51065 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  C7V31_RS03205 (C7V31_03205) - 51081..51554 (-) 474 WP_000855064.1 antirestriction protein -
  C7V31_RS03215 (C7V31_03215) - 51896..52516 (-) 621 Protein_56 DUF932 domain-containing protein -
  C7V31_RS03220 (C7V31_03220) istA 52712..54253 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  C7V31_RS03225 (C7V31_03225) istB 54268..55014 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  C7V31_RS03230 (C7V31_03230) - 55100..55300 (-) 201 Protein_59 DUF945 domain-containing protein -
  C7V31_RS03240 (C7V31_03240) - 55418..55613 (-) 196 Protein_60 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=280394 C7V31_RS03200 WP_001186775.1 50589..51065(-) (radC) [Escherichia coli strain SCEC020022]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=280394 C7V31_RS03200 WP_001186775.1 50589..51065(-) (radC) [Escherichia coli strain SCEC020022]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399