Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7J90_RS02020 Genome accession   NZ_CP027770
Coordinates   407286..408659 (-) Length   457 a.a.
NCBI ID   WP_103207172.1    Uniprot ID   -
Organism   Staphylococcus felis strain ATCC 49168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 402286..413659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7J90_RS01995 (C7J90_01995) cysE 402422..403051 (-) 630 WP_174688364.1 serine O-acetyltransferase -
  C7J90_RS02000 (C7J90_02000) gltX 403507..404961 (-) 1455 WP_103207176.1 glutamate--tRNA ligase -
  C7J90_RS02005 (C7J90_02005) ispF 405036..405518 (-) 483 WP_103207175.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  C7J90_RS02010 (C7J90_02010) ispD 405511..406209 (-) 699 WP_103207174.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  C7J90_RS02015 (C7J90_02015) - 406206..407273 (-) 1068 WP_103207173.1 PIN/TRAM domain-containing protein -
  C7J90_RS02020 (C7J90_02020) radA 407286..408659 (-) 1374 WP_103207172.1 DNA repair protein RadA Machinery gene
  C7J90_RS02025 (C7J90_02025) - 408846..411305 (-) 2460 WP_103207171.1 ATP-dependent Clp protease ATP-binding subunit -
  C7J90_RS02030 (C7J90_02030) - 411321..412325 (-) 1005 WP_103207170.1 protein arginine kinase -
  C7J90_RS02035 (C7J90_02035) - 412318..412728 (-) 411 Protein_392 UvrB/UvrC motif-containing protein -
  C7J90_RS02040 (C7J90_02040) - 412859..413320 (-) 462 WP_103207167.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50330.95 Da        Isoelectric Point: 7.7464

>NTDB_id=280393 C7J90_RS02020 WP_103207172.1 407286..408659(-) (radA) [Staphylococcus felis strain ATCC 49168]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNTLEESIMQKSAQPKHGVRAQKANVAKVQKLSDIKQEQSPRILTNSDEFN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSQHKRVLYITGEESLNQTKLRADRLDEDASQLNVFAETDLEIIHET
VKKVEPQLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIVIATASSFQNKAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVILPQTNIGGWTYPEQIEVIGVTSVHEALQKAFKSK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=280393 C7J90_RS02020 WP_103207172.1 407286..408659(-) (radA) [Staphylococcus felis strain ATCC 49168]
GTGGCAAAGAAAAAAGTCATATTTGAATGTACAGCGTGTGGGTATCAATCACCTAAGTGGATGGGCAAATGTCCTAATTG
TGGTGCGTGGAATACACTGGAAGAATCTATTATGCAAAAATCAGCACAGCCTAAACATGGTGTAAGGGCACAAAAGGCCA
ATGTAGCCAAAGTGCAAAAACTGAGCGACATTAAACAAGAACAGTCACCCCGAATTCTTACAAATAGTGATGAATTTAAT
CGTGTGCTTGGTGGAGGTATAGTAGAAGGATCACTCGTCTTAATTGGAGGCGATCCAGGTATTGGAAAGTCCACATTATT
GTTACAAATGTGTGCTGCACTTTCTCAGCATAAACGTGTTTTATATATTACCGGTGAAGAATCTTTAAATCAAACGAAAT
TACGTGCAGATCGGCTTGATGAAGATGCAAGTCAACTCAATGTATTTGCCGAAACAGATTTAGAAATCATACATGAAACA
GTGAAAAAAGTAGAGCCGCAACTGATTGTAGTGGACTCGATACAAACCATCTATCATCCAGAAATTAGTTCAGCACCTGG
ATCAGTTTCACAAGTTAGAGAGAGTACACAAAGTTTAATGCATATCGCAAAGCAAATGAATATCGCTACGTTTATTGTGG
GGCATGTTACAAAAGAAGGTCAAATTGCAGGACCACGTTTACTTGAGCATATGGTCGACACAGTTTTGTATTTTGAAGGT
GACGAACATCATGCTTATCGAATATTACGTGCGGTTAAAAACCGCTTTGGCTCGACCAATGAAATGGGTATTTTTGAAAT
GAAGCAAACAGGTTTAAAAAGTGTGCCCAATCCATCTGAAATGTTTTTGGAAGAGCGATCAACTAATGTCCCAGGTTCGA
CGATTGTAGCGACTATGGAAGGGACAAGACCACTTTTGATTGAAGTACAAGCGCTTGTGACTCCGACTACATTTAACAAT
CCAAGACGTATGGCCACGGGCATTGACCATAATCGATTAAGCTTATTAATGGCCGTGCTTGAAAAGAAAGAAGGCTATCT
CTTACAGCAGCAAGATGCTTATATAAAAGTAGCTGGTGGTGTCAAGTTAACTGAGCCTGCTGTTGATTTAGGGATTGTGA
TTGCAACAGCGTCTAGTTTTCAAAATAAAGCCGTTGATGGTTTAGACTGTTTTATAGGAGAGGTCGGTCTAACTGGTGAA
GTACGCCGTGTGTCACGAATAGAACAACGTGTTCAAGAAGCGGCCAAATTAGGATTTAAACGTGTTATTTTACCACAAAC
CAATATTGGCGGTTGGACTTATCCAGAACAAATTGAAGTTATCGGTGTGACATCTGTTCACGAAGCACTTCAAAAAGCCT
TTAAATCAAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.157

100

0.663
  radA Streptococcus pneumoniae Rx1

58.59

99.344

0.582
  radA Streptococcus pneumoniae D39

58.59

99.344

0.582
  radA Streptococcus pneumoniae R6

58.59

99.344

0.582
  radA Streptococcus pneumoniae TIGR4

58.59

99.344

0.582
  radA Streptococcus mitis NCTC 12261

58.59

99.344

0.582
  radA Streptococcus mitis SK321

58.59

99.344

0.582

Multiple sequence alignment