Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C7H83_RS12350 Genome accession   NZ_CP027768
Coordinates   2508787..2510604 (-) Length   605 a.a.
NCBI ID   WP_103103425.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain LMG 26042     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2503787..2515604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H83_RS12325 (C7H83_12380) mgtE 2503981..2505345 (-) 1365 WP_103892837.1 magnesium transporter -
  C7H83_RS12330 (C7H83_12385) - 2505351..2506253 (-) 903 WP_103892838.1 RluA family pseudouridine synthase -
  C7H83_RS12335 (C7H83_12390) - 2506502..2507308 (-) 807 WP_174706094.1 NAD kinase -
  C7H83_RS12340 (C7H83_12395) - 2507301..2507975 (-) 675 WP_103892840.1 GTP pyrophosphokinase family protein -
  C7H83_RS12345 (C7H83_12400) - 2508130..2508705 (+) 576 WP_061840319.1 CYTH domain-containing protein -
  C7H83_RS12350 (C7H83_12405) pepF 2508787..2510604 (-) 1818 WP_103103425.1 oligoendopeptidase F Regulator
  C7H83_RS12355 (C7H83_12410) - 2510692..2511660 (-) 969 WP_103892841.1 competence protein CoiA -
  C7H83_RS12360 (C7H83_12415) - 2511771..2512487 (-) 717 WP_103892842.1 adaptor protein MecA -
  C7H83_RS12365 (C7H83_12420) spxA 2512636..2513034 (-) 399 WP_014124069.1 transcriptional regulator SpxA -
  C7H83_RS12370 (C7H83_12425) - 2513194..2514909 (-) 1716 WP_014124068.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69975.03 Da        Isoelectric Point: 4.7775

>NTDB_id=280387 C7H83_RS12350 WP_103103425.1 2508787..2510604(-) (pepF) [Tetragenococcus halophilus strain LMG 26042]
MSEPKKLPKRDEVAENLTWDLTKIFKDDQAFEKAFSALQEKLRYADSYRGTLGDGSQAFLAALEYLLDVSRQLETVYVYS
HLKNDQDTSNTTYQALNSRAESLVTQADEKLSFFEPELLSLSDERIWQYFKDEPKLEIYRHFVEQIVANRAHVLPKEQEA
LLAGAGEIFGASSNTFSIMNNADFVFPVIEDENGEKVQLSHGVYGQLMESTDRLVRENAFKGLYSVYKQFGNTLASTLNS
HIKTHNYQAKVRHYHSAREAALSSNHIPESVYDHLVDVVNKNLNLLHRYMGLRKRLLQVEKLHMYDVYTPLLGEAPISFT
YDQAVDKAFEVLAPMGEEYLSVVKKAFDERWIDVVENQGKRSGAYSSGTYDTNPYILLNWHDTLDHLFTLVHEMGHSVHS
YFTQNNQPYVYGDYSIFLAEIASTTNENILTEHLLQTENDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDAKGT
PLTSEFLNEHYGELNRRYYGDEMEDDPEIHLEWSRIPHFYYNYYVFQYATGFSAASALSQKILSEDSSALDRYLTYLKSG
DSDYPIEVMKKAGVDMTKSDYLEDAMHVFEERLNELELLVDELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=280387 C7H83_RS12350 WP_103103425.1 2508787..2510604(-) (pepF) [Tetragenococcus halophilus strain LMG 26042]
ATGTCAGAACCTAAAAAATTACCTAAAAGAGACGAAGTGGCAGAAAATTTGACTTGGGATTTAACAAAAATCTTTAAAGA
TGACCAAGCATTTGAAAAAGCTTTTAGCGCGCTACAAGAAAAACTGCGGTATGCCGATTCCTATAGAGGAACTCTAGGAG
ATGGCTCACAAGCATTTCTAGCTGCACTTGAATATTTATTAGATGTTTCTCGTCAATTAGAGACTGTCTATGTTTATAGT
CATTTAAAAAATGACCAAGATACTTCAAATACAACTTATCAAGCGCTTAATTCTAGAGCAGAGTCTTTGGTAACACAAGC
AGATGAAAAATTATCTTTTTTCGAACCGGAATTATTATCGTTAAGTGATGAAAGGATTTGGCAGTATTTTAAAGACGAAC
CAAAACTTGAAATTTATCGACATTTTGTTGAACAAATCGTAGCAAATCGTGCCCACGTTTTGCCAAAAGAACAAGAAGCT
TTATTAGCAGGCGCTGGAGAGATTTTTGGTGCTTCTAGTAACACTTTTTCTATTATGAACAATGCTGATTTTGTTTTTCC
TGTCATTGAAGATGAAAATGGAGAAAAAGTACAGCTTTCTCATGGTGTTTATGGACAATTAATGGAAAGCACTGATCGTT
TAGTGCGTGAGAATGCTTTTAAAGGACTATATAGTGTATACAAGCAGTTTGGTAACACTCTTGCTTCTACACTGAATTCA
CATATTAAAACACATAATTATCAAGCAAAAGTGCGCCATTACCATTCAGCTAGAGAAGCTGCTTTATCAAGCAACCATAT
TCCAGAAAGCGTTTATGATCATTTAGTAGATGTGGTCAATAAAAACTTAAACCTTCTTCATCGCTATATGGGACTTAGGA
AACGTTTATTACAAGTGGAAAAATTGCATATGTATGATGTTTACACGCCACTTTTAGGCGAAGCTCCTATTAGTTTTACT
TATGACCAGGCGGTAGATAAAGCGTTTGAAGTACTAGCGCCTATGGGAGAAGAGTATTTAAGTGTCGTGAAAAAGGCCTT
TGATGAACGTTGGATCGATGTTGTAGAAAATCAAGGAAAACGTAGCGGTGCTTATTCTTCAGGTACTTATGATACCAATC
CTTATATTTTATTAAATTGGCATGATACATTGGATCATTTATTTACCCTGGTACATGAAATGGGGCATAGTGTTCATAGT
TACTTTACCCAAAATAATCAACCTTATGTATATGGAGATTACTCAATTTTCTTAGCAGAGATTGCTTCAACTACCAATGA
AAATATCTTGACTGAACATCTTTTACAAACAGAAAATGACCCACGCGTTCGGGCATATGTATTAAATCACTATTTAGACG
GTTTTAAAGGTACAGTTTTCCGTCAAACACAATTTGCGGAGTTTGAGCATTTTATGCACACTGAGGACGCTAAAGGCACA
CCATTAACAAGTGAGTTTTTAAATGAGCATTATGGAGAGTTGAATAGACGATATTATGGTGATGAAATGGAAGACGATCC
AGAAATACATCTTGAATGGTCGCGTATTCCTCATTTTTATTATAATTACTATGTGTTCCAATATGCGACAGGTTTTTCTG
CTGCTTCTGCCTTGTCACAAAAAATCTTATCAGAAGACTCGAGTGCCTTGGATCGTTATTTGACCTATCTAAAATCTGGT
GATAGTGATTATCCTATCGAAGTGATGAAAAAAGCTGGAGTGGATATGACAAAATCGGATTATTTAGAAGATGCGATGCA
TGTTTTTGAAGAGCGGTTAAATGAGTTAGAACTACTCGTTGATGAATTAGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.143

98.017

0.54

Multiple sequence alignment