Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D9N32_RS22945 Genome accession   NZ_CP032879
Coordinates   4211038..4211643 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WCHEC000837     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4206038..4216643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9N32_RS22915 (D9N32_22915) rsmS 4206740..4206904 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  D9N32_RS22920 (D9N32_22920) priC 4206918..4207445 (-) 528 WP_001522038.1 primosomal replication protein N'' -
  D9N32_RS22925 (D9N32_22925) ybaN 4207515..4207892 (+) 378 WP_001188905.1 DUF454 family protein -
  D9N32_RS22930 (D9N32_22930) apt 4208045..4208596 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  D9N32_RS22935 (D9N32_22935) dnaX 4208725..4210656 (+) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  D9N32_RS22940 (D9N32_22940) ybaB 4210709..4211038 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  D9N32_RS22945 (D9N32_22945) recR 4211038..4211643 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  D9N32_RS22950 (D9N32_22950) htpG 4211753..4213627 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  D9N32_RS22960 (D9N32_22960) adk 4213808..4214452 (+) 645 WP_001220233.1 adenylate kinase -
  D9N32_RS22965 (D9N32_22965) hemH 4214584..4215546 (+) 963 WP_001250117.1 ferrochelatase -
  D9N32_RS22970 (D9N32_22970) aes 4215543..4216502 (-) 960 WP_000801805.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=280385 D9N32_RS22945 WP_001195025.1 4211038..4211643(+) (recR) [Escherichia coli strain WCHEC000837]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=280385 D9N32_RS22945 WP_001195025.1 4211038..4211643(+) (recR) [Escherichia coli strain WCHEC000837]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443