Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9N32_RS19840 Genome accession   NZ_CP032879
Coordinates   3568879..3569355 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC000837     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3563879..3574355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9N32_RS19815 (D9N32_19815) - 3566919..3567114 (+) 196 Protein_3377 DUF905 family protein -
  D9N32_RS19825 (D9N32_19825) - 3567232..3568050 (+) 819 WP_001234656.1 DUF932 domain-containing protein -
  D9N32_RS19835 (D9N32_19835) - 3568392..3568863 (+) 472 Protein_3379 antirestriction protein -
  D9N32_RS19840 (D9N32_19840) radC 3568879..3569355 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  D9N32_RS19845 (D9N32_19845) - 3569420..3569641 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  D9N32_RS19850 (D9N32_19850) - 3569804..3570172 (+) 369 WP_021553056.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D9N32_RS19855 (D9N32_19855) - 3570262..3570360 (+) 99 Protein_3383 TA system toxin CbtA family protein -
  D9N32_RS19860 (D9N32_19860) mtnK 3571099..3572358 (+) 1260 WP_000132327.1 S-methyl-5-thioribose kinase -
  D9N32_RS19865 (D9N32_19865) mtnA 3572368..3573483 (+) 1116 WP_001022014.1 S-methyl-5-thioribose-1-phosphate isomerase -
  D9N32_RS19870 (D9N32_19870) - 3573514..3574155 (+) 642 WP_000439687.1 L-fuculose-phosphate aldolase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=280376 D9N32_RS19840 WP_001186774.1 3568879..3569355(+) (radC) [Escherichia coli strain WCHEC000837]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=280376 D9N32_RS19840 WP_001186774.1 3568879..3569355(+) (radC) [Escherichia coli strain WCHEC000837]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399