Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7H83_RS01950 Genome accession   NZ_CP027768
Coordinates   366085..367455 (+) Length   456 a.a.
NCBI ID   WP_103891912.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain LMG 26042     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 361085..372455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H83_RS01930 (C7H83_01920) - 361952..363289 (+) 1338 WP_103891909.1 aspartate aminotransferase family protein -
  C7H83_RS01935 (C7H83_01925) - 363330..364418 (+) 1089 WP_103891910.1 hypothetical protein -
  C7H83_RS01940 (C7H83_01930) - 364463..365362 (-) 900 WP_174706056.1 aldo/keto reductase -
  C7H83_RS01945 (C7H83_01935) - 365561..366061 (+) 501 WP_103891911.1 dUTP diphosphatase -
  C7H83_RS01950 (C7H83_01940) radA 366085..367455 (+) 1371 WP_103891912.1 DNA repair protein RadA Machinery gene
  C7H83_RS01955 (C7H83_01945) - 367480..368616 (+) 1137 WP_103100115.1 PIN/TRAM domain-containing protein -
  C7H83_RS01960 (C7H83_01950) gltX 368743..370200 (+) 1458 WP_014123421.1 glutamate--tRNA ligase -
  C7H83_RS01965 (C7H83_01955) cysS 370457..371866 (+) 1410 WP_014123422.1 cysteine--tRNA ligase -
  C7H83_RS01970 (C7H83_01960) - 371863..372252 (+) 390 WP_014123423.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50088.65 Da        Isoelectric Point: 6.5285

>NTDB_id=280360 C7H83_RS01950 WP_103891912.1 366085..367455(+) (radA) [Tetragenococcus halophilus strain LMG 26042]
MAKKVKTQFECQNCGYISPRYLGKCPNCGSWNSMVEEKLQDTTDRRNRTTLTGNKMQPTLLKDVVPKKEPRVKTSLDELN
RVLGGGVVPGSMILLGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRAQRLGDAENDFYLFAETDMQDIRE
TIEKLQPDYVIIDSIQTMTQPDISSVAGSVSQVRETTAELLKIAKSNEIAVFVVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKYQSFRILRAVKNRFGSTNEIGIFEMYEQGLKEVSNPSQVFLEERLEGTSGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTATGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTKPTECFIGEIGLTG
EIRRVSAIEQRVKEVQKLGFEKVYIPKNNLSGWKAPADIEVVGIATLDEALKRIFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=280360 C7H83_RS01950 WP_103891912.1 366085..367455(+) (radA) [Tetragenococcus halophilus strain LMG 26042]
ATGGCAAAAAAGGTAAAAACACAATTTGAATGTCAAAATTGCGGTTATATTTCACCTAGGTATTTAGGCAAATGCCCTAA
TTGCGGTAGTTGGAATTCGATGGTAGAAGAAAAACTACAAGATACTACTGATCGTAGGAATCGAACAACACTGACAGGCA
ACAAGATGCAGCCGACACTTTTAAAAGATGTTGTTCCTAAAAAAGAGCCGCGAGTAAAGACATCTCTAGATGAATTGAAC
CGTGTCTTAGGTGGAGGTGTGGTTCCAGGATCGATGATCTTATTAGGTGGGGATCCTGGTATTGGTAAATCCACCTTGCT
TTTACAAGTATCACAACAGTTAGCAGCAACCGGTGGCACAGTACTTTATGTTTCCGGAGAAGAAAGTGCAGAACAAATCA
AATTACGAGCGCAGCGTTTAGGCGATGCCGAAAATGATTTTTATTTATTTGCTGAAACAGATATGCAAGATATTCGAGAA
ACAATCGAAAAGCTGCAACCTGATTATGTGATCATTGATTCCATTCAAACAATGACACAACCGGATATATCAAGCGTGGC
CGGAAGTGTTAGTCAAGTTCGAGAAACTACGGCCGAGTTATTAAAAATCGCTAAATCAAACGAAATTGCCGTCTTTGTGG
TTGGCCATGTGACTAAAGAAGGTTCTATCGCTGGCCCTCGTATGCTAGAGCATATGGTTGATACAGTATTGTATTTTGAA
GGAGATAAGTACCAAAGTTTTCGTATTTTACGGGCAGTAAAAAACCGTTTTGGTTCGACTAATGAGATCGGCATTTTTGA
AATGTATGAACAAGGCCTCAAAGAAGTAAGTAATCCTTCACAAGTTTTTTTAGAAGAACGATTAGAAGGAACTAGCGGAT
CTGCCATTGTGGTTGCGATGGAAGGAACGCGTCCTATTCTAGTGGAAATACAAGCATTAGTTACACCAACGATGTTTGGA
AATGCTAAACGAACGGCTACTGGCTTGGATTTTAATCGAGTCTCCTTGATTATGGCTGTATTAGAAAAACGAGCAGGCCT
ACTTTTACAAAATCAGGATGCTTATTTAAAAGCAGCTGGTGGTGTAAAATTAAATGAACCAGCGATCGATCTAGCTATAG
CTATTAGTATTGCTTCAAGTTATAAAGAAAAAGGTACAAAACCTACTGAATGTTTCATTGGGGAAATTGGTCTTACAGGG
GAAATTCGTCGCGTGAGTGCTATTGAGCAGCGCGTAAAAGAGGTTCAAAAATTAGGTTTTGAGAAAGTGTATATACCAAA
AAATAATTTAAGCGGCTGGAAAGCGCCAGCTGACATCGAGGTTGTTGGTATCGCAACACTTGATGAAGCATTAAAACGTA
TATTTAGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

70.33

99.781

0.702
  radA Streptococcus mitis NCTC 12261

70.33

99.781

0.702
  radA Streptococcus pneumoniae Rx1

70.33

99.781

0.702
  radA Streptococcus pneumoniae D39

70.33

99.781

0.702
  radA Streptococcus pneumoniae R6

70.33

99.781

0.702
  radA Streptococcus pneumoniae TIGR4

70.33

99.781

0.702
  radA Bacillus subtilis subsp. subtilis str. 168

64.08

98.904

0.634

Multiple sequence alignment