Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   D9N32_RS12020 Genome accession   NZ_CP032879
Coordinates   2005521..2006753 (+) Length   410 a.a.
NCBI ID   WP_001153641.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC000837     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000521..2011753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9N32_RS12005 (D9N32_12005) - 2001036..2002712 (+) 1677 WP_012767757.1 polysaccharide biosynthesis/export family protein -
  D9N32_RS12010 (D9N32_12010) kdsB 2002722..2003462 (+) 741 WP_000030740.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D9N32_RS12015 (D9N32_12015) - 2003459..2005486 (+) 2028 WP_000579244.1 capsular polysaccharide biosynthesis protein -
  D9N32_RS12020 (D9N32_12020) kpsS 2005521..2006753 (+) 1233 WP_001153641.1 capsular biosynthesis protein Regulator
  D9N32_RS12025 (D9N32_12025) - 2007007..2007966 (-) 960 WP_000991482.1 hypothetical protein -
  D9N32_RS12030 (D9N32_12030) - 2008001..2009140 (-) 1140 WP_000069818.1 hypothetical protein -
  D9N32_RS12035 (D9N32_12035) - 2009715..2011088 (-) 1374 WP_000789018.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48997.65 Da        Isoelectric Point: 9.9872

>NTDB_id=280338 D9N32_RS12020 WP_001153641.1 2005521..2006753(+) (kpsS) [Escherichia coli strain WCHEC000837]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLDRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKLD
KYFQSLSCQV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=280338 D9N32_RS12020 WP_001153641.1 2005521..2006753(+) (kpsS) [Escherichia coli strain WCHEC000837]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGACCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGCTGCGAGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGACCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCGTGGTATGAAGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCAATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTGTTGGTTAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAACTGGAT
AAATATTTTCAGAGCTTGTCGTGTCAAGTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

96.585

0.383