Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D9N32_RS10240 Genome accession   NZ_CP032879
Coordinates   1659910..1660425 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WCHEC000837     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654910..1665425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9N32_RS10215 (D9N32_10215) ygaZ 1655309..1656046 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  D9N32_RS10220 (D9N32_10220) ygaH 1656036..1656371 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  D9N32_RS10225 (D9N32_10225) emrR 1656462..1656992 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  D9N32_RS10230 (D9N32_10230) emrA 1657119..1658291 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  D9N32_RS10235 (D9N32_10235) emrB 1658308..1659846 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  D9N32_RS10240 (D9N32_10240) luxS 1659910..1660425 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  D9N32_RS10245 (D9N32_10245) gshA 1660575..1662131 (-) 1557 WP_001521120.1 glutamate--cysteine ligase -
  D9N32_RS10250 (D9N32_10250) yqaA 1662204..1662632 (-) 429 WP_001287454.1 YqaA family protein -
  D9N32_RS10255 (D9N32_10255) yqaB 1662629..1663195 (-) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  D9N32_RS10285 (D9N32_10285) csrA 1664487..1664672 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=280330 D9N32_RS10240 WP_001130211.1 1659910..1660425(-) (luxS) [Escherichia coli strain WCHEC000837]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=280330 D9N32_RS10240 WP_001130211.1 1659910..1660425(-) (luxS) [Escherichia coli strain WCHEC000837]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731