Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J83_RS26160 Genome accession   NZ_CP027762
Coordinates   5649303..5650670 (-) Length   455 a.a.
NCBI ID   WP_017139308.1    Uniprot ID   A0A2P8L9W2
Organism   Pseudomonas sp. LBUM920     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5644303..5655670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J83_RS26135 (C4J83_5184) yjiA 5644580..5645536 (-) 957 WP_124418503.1 GTPase -
  C4J83_RS26140 (C4J83_5185) - 5645715..5645912 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  C4J83_RS26145 (C4J83_5186) - 5645928..5647994 (-) 2067 WP_106579291.1 carbon starvation CstA family protein -
  C4J83_RS26150 (C4J83_5187) - 5648168..5648536 (+) 369 WP_124418504.1 PilZ domain-containing protein -
  C4J83_RS26155 (C4J83_5188) - 5648541..5649275 (-) 735 WP_177416161.1 hypothetical protein -
  C4J83_RS26160 (C4J83_5189) radA 5649303..5650670 (-) 1368 WP_017139308.1 DNA repair protein RadA Machinery gene
  C4J83_RS26165 (C4J83_5190) - 5650706..5651245 (-) 540 WP_106579293.1 ankyrin repeat domain-containing protein -
  C4J83_RS26170 (C4J83_5191) katB 5651304..5652845 (-) 1542 WP_124418505.1 catalase KatB -
  C4J83_RS26175 (C4J83_5192) mscL 5653133..5653549 (+) 417 WP_106579295.1 large-conductance mechanosensitive channel protein MscL -
  C4J83_RS26180 (C4J83_5193) - 5653607..5654383 (-) 777 WP_119740977.1 ferredoxin--NADP reductase -
  C4J83_RS26185 (C4J83_5195) - 5654839..5655549 (+) 711 WP_119740975.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48749.33 Da        Isoelectric Point: 7.1316

>NTDB_id=280323 C4J83_RS26160 WP_017139308.1 5649303..5650670(-) (radA) [Pseudomonas sp. LBUM920]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNKPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLKVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=280323 C4J83_RS26160 WP_017139308.1 5649303..5650670(-) (radA) [Pseudomonas sp. LBUM920]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAATGCACCGAGTG
CGGCGCGTGGAACACCCTGACGGAAACCATGATTGAAAGCGGCGGCGCCGCAGCGCCCACCGGCCGTGCAGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTCGAAGAAATCCCGCGTTTCTCCACCGCGTCCGGTGAGCTC
GACCGCGTGCTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACCAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAGCAGGTGG
CGATGCGCGCCCGCCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTAATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTTACCGAACAGCTGCAATCGGCGCC
GGGCGGCGTCTCCCAAGTGCGCGAGAGCGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTAACCAAAGAAGGTGCGCTGGCCGGCCCGCGGGTACTGGAGCACATGGTCGACACCGTGTTGTATTTCGAG
GGTGAATCCGATGGCCGTTTGCGGTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTGAACGAACTGGGCGTGTTTGC
CATGACCGACCGTGGGCTTAAAGAAGTCTCCAACCCCTCGGCGATTTTTCTCACACGCGCTCAGGAAGAAGTCCCAGGCA
GCGTGGTGATGGCGACGTGGGAAGGCACTCGTCCGATGCTGGTGGAAGTGCAGGCACTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGCGTGACCCTTGGCCTGGACCAGAATCGCCTGGCAATGCTGCTGGCGGTGTTGCACCGTCACGGCGGCAT
TCCCACCCATGACCAGGATGTGTTTCTCAACGTGGTCGGTGGGGTGAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATAAACCGTTGCCCCACGATCTGCTGGTGTTTGGTGAGGTTGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGTCTGAAGGAGGCGGCCAAGCACGGCTTCAAGCGCGCGATTGTGCCCAA
GGGCAACGCGCCCAAGGAAATGCCGGCAGGGTTGAAGGTGATCGGTGTAACCCGCCTGGAGCAGGCGCTGGATGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P8L9W2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47

Multiple sequence alignment