Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9N32_RS06365 Genome accession   NZ_CP032879
Coordinates   868664..869140 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC000837     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 863664..874140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9N32_RS06330 (D9N32_06330) - 863828..864733 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  D9N32_RS06335 (D9N32_06335) - 864730..865800 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  D9N32_RS06340 (D9N32_06340) - 865936..866619 (+) 684 WP_000775500.1 hypothetical protein -
  D9N32_RS06345 (D9N32_06345) - 866635..867045 (+) 411 WP_000846713.1 hypothetical protein -
  D9N32_RS06355 (D9N32_06355) - 867266..868087 (+) 822 WP_021523139.1 DUF932 domain-containing protein -
  D9N32_RS06360 (D9N32_06360) - 868169..868648 (+) 480 WP_001703514.1 antirestriction protein -
  D9N32_RS06365 (D9N32_06365) radC 868664..869140 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  D9N32_RS06370 (D9N32_06370) yeeT 869203..869424 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  D9N32_RS06375 (D9N32_06375) cbeA 869498..869866 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D9N32_RS06380 (D9N32_06380) cbtA 869955..870328 (+) 374 Protein_850 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D9N32_RS06385 (D9N32_06385) yeeW 870325..870519 (+) 195 WP_000988600.1 DUF5983 family protein -
  D9N32_RS06390 (D9N32_06390) - 870565..870645 (+) 81 Protein_852 hypothetical protein -
  D9N32_RS06395 (D9N32_06395) - 870934..871080 (-) 147 Protein_853 transposase domain-containing protein -
  D9N32_RS06400 (D9N32_06400) - 871134..871316 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D9N32_RS06405 (D9N32_06405) tmaR 871417..871746 (-) 330 WP_000450409.1 DUF496 family protein -
  D9N32_RS06410 (D9N32_06410) yeeA 871918..872976 (-) 1059 WP_001200890.1 FUSC family protein -
  D9N32_RS06415 (D9N32_06415) sbmC 873174..873647 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=280319 D9N32_RS06365 WP_001186773.1 868664..869140(+) (radC) [Escherichia coli strain WCHEC000837]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=280319 D9N32_RS06365 WP_001186773.1 868664..869140(+) (radC) [Escherichia coli strain WCHEC000837]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392