Detailed information NTG0280278

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D9C08_RS17335
• Genome accession: NZ_CP032872
• Coordinates: 3223390..3224517 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain 2KL1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3218390..3229517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C08_RS23940	-	3218437..3218649 (-)	213	Protein_3336	recombinase family protein	-
D9C08_RS17315 (D9C08_17315)	fumC	3218868..3220256 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
D9C08_RS17320 (D9C08_17320)	-	3220423..3221313 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
D9C08_RS17325 (D9C08_17325)	-	3222255..3222650 (+)	396	WP_014480327.1	VOC family protein	-
D9C08_RS17335 (D9C08_17335)	rapC	3223390..3224517 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
D9C08_RS24055 (D9C08_17340)	-	3224699..3226625 (+)	1927	Protein_3341	T7SS effector LXG polymorphic toxin	-
D9C08_RS17345 (D9C08_17345)	-	3226639..3226926 (+)	288	WP_014480331.1	hypothetical protein	-
D9C08_RS17355 (D9C08_17355)	-	3227329..3227769 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
D9C08_RS17360 (D9C08_17360)	-	3227868..3228320 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
D9C08_RS17365 (D9C08_17365)	cdiI	3228417..3228776 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
D9C08_RS17370 (D9C08_17370)	-	3228848..3229360 (+)	513	WP_014477426.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=280278 D9C08_RS17335 WP_014480328.1 3223390..3224517(-) (rapC) [Bacillus subtilis subsp. subtilis strain 2KL1]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=280278 D9C08_RS17335 WP_014480328.1 3223390..3224517(-) (rapC) [Bacillus subtilis subsp. subtilis strain 2KL1]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397