Detailed information    

insolico Bioinformatically predicted

Overview


Name   recP/tkt   Type   Machinery gene
Locus tag   D9C08_RS13710 Genome accession   NZ_CP032872
Coordinates   2594707..2596710 (+) Length   667 a.a.
NCBI ID   WP_014476936.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2589707..2601710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS13670 (D9C08_13670) pghL 2590074..2590832 (+) 759 WP_069837523.1 gamma-polyglutamate hydrolase PghL -
  D9C08_RS13675 (D9C08_13675) - 2590859..2591308 (-) 450 WP_014479935.1 YndM family protein -
  D9C08_RS13680 (D9C08_13680) fosM 2591516..2591935 (+) 420 WP_014479937.1 FosM family fosfomycin resistance protein -
  D9C08_RS23890 - 2591859..2592198 (+) 340 Protein_2624 hypothetical protein -
  D9C08_RS13690 (D9C08_13690) dinR/lexA 2592485..2593102 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  D9C08_RS13695 (D9C08_13695) yneA 2593252..2593569 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  D9C08_RS13700 (D9C08_13700) dinL 2593588..2594241 (+) 654 WP_014479938.1 recombinase family protein -
  D9C08_RS13705 (D9C08_13705) ynzC 2594305..2594538 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  D9C08_RS13710 (D9C08_13710) recP/tkt 2594707..2596710 (+) 2004 WP_014476936.1 transketolase Machinery gene
  D9C08_RS13715 (D9C08_13715) sirA 2596863..2597309 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  D9C08_RS13720 (D9C08_13720) yneF 2597395..2597613 (+) 219 WP_003221221.1 YneF family protein -
  D9C08_RS13725 (D9C08_13725) ynzD 2597687..2597860 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -
  D9C08_RS13730 (D9C08_13730) ccdA 2598080..2598787 (+) 708 WP_003231585.1 cytochrome c-type biogenesis protein CcdA -
  D9C08_RS13735 (D9C08_13735) yneI 2598876..2599238 (+) 363 WP_003245707.1 response regulator -
  D9C08_RS13740 (D9C08_13740) yneJ 2599317..2599808 (+) 492 WP_010886519.1 CcdC family protein -
  D9C08_RS13750 (D9C08_13750) yneK 2601129..2601557 (-) 429 WP_003231580.1 DynA interaction protein YneK -

Sequence


Protein


Download         Length: 667 a.a.        Molecular weight: 72300.39 Da        Isoelectric Point: 4.7291

>NTDB_id=280254 D9C08_RS13710 WP_014476936.1 2594707..2596710(+) (recP/tkt) [Bacillus subtilis subsp. subtilis strain 2KL1]
MDTIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFVLSAGHGSALLYSMLHLSG
FDLSIEDLKGFRQWGSKTPGHPEFGHTAGVDATTGPLGQGIAMAVGMAIAERHLAETYNRDSFNVVDHYTYSICGDGDLM
EGISSEAASLAGHLQLGRLIVLYDSNDISLDGDLDRSFSENVKQRFEAMNWEVLYVEDGNNIEELTAAIEKARQNEKKPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGKEESKLTKEAYAWTYEEDFYVPSEVYEHFAAAVKESGEKKEQEWNAQFAKYKE
VYPELAEQLELAIKGELPKDWDQEVPVYEKGSSLASRASSGEVLNGLAKKIPFFVGGSADLAGSNKTTIKNAGDFTAVDY
SGKNFWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPVEQLA
SLRAMPNLSLIRPADGNETAAAWKLAVQSTDHPTALVLTRQNLPTIDQTAEEALAGVEKGAYVVSKSKNETPDALLIASG
SEVGLAIEAQAELAKENIDVSVVSMPSMDRFEKQSDEYKNEVLPADVKKRLAIEMGSSFGWGKYTGLEGDVLGIDRFGAS
APGETIINEYGFSVPNVVNRVKALINK

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=280254 D9C08_RS13710 WP_014476936.1 2594707..2596710(+) (recP/tkt) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGGATACAATTGAAAAGAAATCAGTTGCTACCATTCGCACACTGTCAATAGACGCTATTGAAAAAGCAAATTCTGGTCA
CCCAGGGATGCCGATGGGAGCCGCTCCAATGGCATACACGCTGTGGACAAAATTTATGAACGTAAGTCCGGCAAACCCTG
GCTGGTTTAACCGTGACCGTTTTGTTTTATCTGCTGGACACGGGTCAGCACTATTATACAGCATGCTTCATTTAAGCGGG
TTTGATCTTAGTATTGAAGATCTTAAGGGATTCCGCCAGTGGGGCAGCAAAACACCAGGACATCCGGAATTCGGACATAC
TGCCGGTGTTGATGCTACAACAGGTCCGCTTGGCCAAGGAATTGCCATGGCAGTCGGTATGGCAATTGCTGAACGCCATT
TAGCGGAAACATACAACCGCGATTCATTTAACGTAGTCGATCATTATACATACAGTATTTGCGGTGATGGTGATTTAATG
GAAGGTATTTCTTCTGAAGCCGCTTCACTCGCAGGCCATCTTCAGCTTGGCCGTCTGATCGTACTATACGATTCTAATGA
CATCTCTCTTGATGGAGACCTCGACCGTTCATTCTCTGAAAACGTGAAACAGCGTTTTGAAGCAATGAATTGGGAAGTTC
TTTATGTTGAGGATGGAAACAATATTGAAGAATTAACAGCGGCTATCGAAAAAGCACGCCAAAATGAAAAGAAACCTACA
TTAATTGAAGTGAAAACGACAATCGGATTCGGTTCACCTAACCGTGCCGGTACATCCGGTGTTCACGGTGCGCCGCTTGG
TAAAGAGGAAAGCAAATTAACAAAAGAAGCTTACGCGTGGACATATGAAGAAGACTTCTACGTTCCGTCAGAAGTTTATG
AGCATTTCGCTGCAGCTGTTAAAGAATCAGGTGAGAAAAAAGAACAAGAATGGAATGCTCAATTCGCTAAATATAAAGAA
GTTTATCCTGAACTTGCTGAACAGCTTGAACTGGCAATCAAAGGAGAGCTTCCGAAGGACTGGGATCAAGAGGTTCCTGT
GTATGAAAAAGGAAGCAGCCTGGCATCCCGTGCATCTTCCGGTGAAGTTCTCAACGGACTTGCGAAAAAAATTCCTTTCT
TTGTCGGAGGTTCTGCTGACCTAGCGGGATCGAACAAAACGACTATTAAAAATGCCGGTGATTTTACAGCGGTTGATTAC
TCAGGCAAAAACTTCTGGTTTGGTGTACGTGAATTTGCGATGGGTGCAGCCTTAAACGGTATGGCGCTTCATGGCGGTCT
TCGTGTATTCGGCGGAACTTTCTTTGTCTTCTCTGATTACCTGCGTCCTGCGATTCGCCTTGCAGCGTTAATGGGCCTTC
CTGTGACATATGTCTTCACACATGACAGTATTGCGGTTGGTGAAGACGGTCCGACGCACGAGCCTGTTGAACAGCTTGCT
TCACTCCGTGCGATGCCTAACCTTTCTTTGATCCGTCCAGCAGACGGCAATGAGACAGCAGCAGCATGGAAGCTTGCAGT
GCAAAGCACTGACCACCCAACAGCGCTAGTGCTTACACGTCAAAACCTTCCTACCATCGATCAAACAGCTGAAGAAGCAT
TGGCAGGAGTAGAAAAAGGTGCATATGTCGTTTCTAAATCTAAAAACGAAACACCTGACGCTCTTCTCATCGCTTCCGGA
TCAGAGGTAGGTCTTGCAATTGAAGCGCAGGCTGAATTGGCAAAAGAAAATATCGATGTTTCTGTTGTCAGCATGCCTTC
AATGGACCGTTTTGAGAAACAATCTGATGAATACAAAAACGAAGTCCTTCCTGCAGATGTGAAAAAACGTCTTGCAATTG
AAATGGGCTCATCATTTGGATGGGGCAAATACACGGGGCTTGAAGGTGACGTTCTCGGCATAGACCGATTCGGTGCATCT
GCTCCAGGTGAAACCATCATTAACGAATACGGCTTCTCAGTTCCGAACGTAGTGAATCGAGTTAAGGCATTAATCAATAA
GTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.647

99.25

0.562


Multiple sequence alignment