Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4J99_RS26715 Genome accession   NZ_CP027758
Coordinates   5870677..5871084 (-) Length   135 a.a.
NCBI ID   WP_124402205.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain R2-54-08W     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5865677..5876084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J99_RS26700 (C4J99_5340) - 5867681..5869732 (-) 2052 WP_124402203.1 methyl-accepting chemotaxis protein -
  C4J99_RS26705 (C4J99_5341) - 5869729..5870253 (-) 525 WP_124402204.1 chemotaxis protein CheW -
  C4J99_RS26710 (C4J99_5342) pilH 5870265..5870630 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  C4J99_RS26715 (C4J99_5343) pilG 5870677..5871084 (-) 408 WP_124402205.1 twitching motility response regulator PilG Regulator
  C4J99_RS26720 (C4J99_5344) gshB 5871324..5872277 (+) 954 WP_043046278.1 glutathione synthase -
  C4J99_RS26725 (C4J99_5345) - 5872355..5873260 (+) 906 WP_124402206.1 energy transducer TonB -
  C4J99_RS26730 (C4J99_5346) - 5873311..5873880 (+) 570 WP_017139445.1 YqgE/AlgH family protein -
  C4J99_RS26735 (C4J99_5347) ruvX 5873880..5874317 (+) 438 WP_057022839.1 Holliday junction resolvase RuvX -
  C4J99_RS26740 (C4J99_5348) pyrR 5874451..5874957 (+) 507 WP_124402207.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C4J99_RS26745 (C4J99_5349) - 5874982..5875986 (+) 1005 WP_034116232.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14999.54 Da        Isoelectric Point: 7.3843

>NTDB_id=280230 C4J99_RS26715 WP_124402205.1 5870677..5871084(-) (pilG) [Pseudomonas synxantha strain R2-54-08W]
MEQHSSALRVMVIDDSKTIRRTAETLLKNMGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPTFK
TIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPAFASVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=280230 C4J99_RS26715 WP_124402205.1 5870677..5871084(-) (pilG) [Pseudomonas synxantha strain R2-54-08W]
ATGGAACAGCATTCCAGCGCCTTGAGGGTAATGGTGATCGACGATTCGAAGACGATCCGCCGCACCGCCGAGACCCTGTT
GAAGAACATGGGGTGCGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCGCGGATAGTGGATCATCACCCGCACA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACCTGCGCCCTGGTGAAGAACAACCCGACGTTCAAG
ACGATCCCGGTGATCATGCTGTCCTCCAAGGATGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTATGTGCCTGCCTTCGCCTCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.079

94.074

0.659

Multiple sequence alignment