Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4J99_RS24550 Genome accession   NZ_CP027758
Coordinates   5418862..5420229 (-) Length   455 a.a.
NCBI ID   WP_124401954.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain R2-54-08W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5413862..5425229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4J99_RS24530 (C4J99_4911) yjiA 5414796..5415755 (-) 960 WP_124401952.1 GTPase -
  C4J99_RS24535 (C4J99_4912) - 5415910..5416107 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  C4J99_RS24540 (C4J99_4913) - 5416123..5418189 (-) 2067 WP_057024512.1 carbon starvation CstA family protein -
  C4J99_RS24545 (C4J99_4914) - 5418365..5418733 (+) 369 WP_124401953.1 PilZ domain-containing protein -
  C4J99_RS24550 (C4J99_4915) radA 5418862..5420229 (-) 1368 WP_124401954.1 DNA repair protein RadA Machinery gene
  C4J99_RS24555 (C4J99_4916) - 5420265..5420810 (-) 546 WP_124401955.1 ankyrin repeat domain-containing protein -
  C4J99_RS24560 (C4J99_4917) - 5420869..5422410 (-) 1542 WP_124401956.1 catalase -
  C4J99_RS24565 (C4J99_4918) mscL 5422696..5423112 (+) 417 WP_043048461.1 large-conductance mechanosensitive channel protein MscL -
  C4J99_RS24570 (C4J99_4919) - 5423156..5423932 (-) 777 WP_124401957.1 ferredoxin--NADP reductase -
  C4J99_RS24575 (C4J99_4920) - 5424382..5425092 (+) 711 WP_043048464.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48852.39 Da        Isoelectric Point: 6.8987

>NTDB_id=280227 C4J99_RS24550 WP_124401954.1 5418862..5420229(-) (radA) [Pseudomonas synxantha strain R2-54-08W]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHMTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPQGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=280227 C4J99_RS24550 WP_124401954.1 5418862..5420229(-) (radA) [Pseudomonas synxantha strain R2-54-08W]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGTGGGGCTGCAGCGCCTACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCAGAAGTCAGTGTCGAAGAGATCCCGCGTTTCTCCACCGCCTCCGGTGAGTTG
GATCGCGTACTCGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGCAAGTCGACCAT
CCTATTGCAGACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCGCGGCGCCTGGGCTTGCCCCAGGACCAGCTGCGGGTCATGACTGAAACCTGCATCGAGAGCATTATCGCC
ACGGCGCGGATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTTACCGAGCAACTGCAATCAGCACC
GGGCGGCGTGTCCCAGGTGCGGGAAAGCGCGGCGCTGTTGGTGCGCTATGCCAAGCAGAGTGGCACGGCGATTTTCCTGG
TGGGGCATATGACCAAGGAAGGCGCGCTGGCGGGGCCACGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGACGGTCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTGAATGAGCTGGGTGTGTTCGC
CATGACTGACCGTGGGCTGAAAGAAGTCTCCAACCCCTCGGCGATATTTCTCACTCGGGCCCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCGACGTGGGAGGGTACCCGGCCCATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTAGCC
AACCCGCGGCGGGTCACGCTCGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCGGTATTGCACCGCCACGGCGGTAT
CCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGTGTCAAGGTGTTGGAGACCGCTTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGTTGCCTCATGACCTGCTGGTGTTCGGTGAAGTGGGCTTGTCGGGT
GAAGTGCGCCCGGTGCCCAGCGGGCAGGAGCGGTTGAAGGAGGCAGCCAAGCATGGCTTCAAGCGCGCAATTGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCCCAGGGCTTGCAGGTGATTGGGGTGACACGCCTGGAGCAGGCGTTGGATGCATTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.841

100

0.473
  radA Streptococcus mitis NCTC 12261

46.623

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.711

100

0.468
  radA Streptococcus pneumoniae R6

46.711

100

0.468
  radA Streptococcus pneumoniae Rx1

46.711

100

0.468
  radA Streptococcus pneumoniae D39

46.711

100

0.468

Multiple sequence alignment