Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   C4K00_RS26475 Genome accession   NZ_CP027757
Coordinates   5786882..5787289 (-) Length   135 a.a.
NCBI ID   WP_124402205.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain R2-4-08W     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5781882..5792289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K00_RS26460 (C4K00_5269) - 5783886..5785937 (-) 2052 WP_124413236.1 methyl-accepting chemotaxis protein -
  C4K00_RS26465 (C4K00_5270) - 5785934..5786458 (-) 525 WP_124413237.1 chemotaxis protein CheW -
  C4K00_RS26470 (C4K00_5271) pilH 5786470..5786835 (-) 366 WP_014720320.1 twitching motility response regulator PilH -
  C4K00_RS26475 (C4K00_5272) pilG 5786882..5787289 (-) 408 WP_124402205.1 twitching motility response regulator PilG Regulator
  C4K00_RS26480 (C4K00_5273) gshB 5787529..5788482 (+) 954 WP_043046278.1 glutathione synthase -
  C4K00_RS26485 (C4K00_5274) - 5788560..5789465 (+) 906 WP_124402206.1 energy transducer TonB -
  C4K00_RS26490 (C4K00_5275) - 5789516..5790085 (+) 570 WP_017139445.1 YqgE/AlgH family protein -
  C4K00_RS26495 (C4K00_5276) ruvX 5790085..5790522 (+) 438 WP_057022839.1 Holliday junction resolvase RuvX -
  C4K00_RS26500 (C4K00_5277) pyrR 5790656..5791162 (+) 507 WP_124413238.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  C4K00_RS26505 (C4K00_5278) - 5791187..5792191 (+) 1005 WP_034116232.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14999.54 Da        Isoelectric Point: 7.3843

>NTDB_id=280205 C4K00_RS26475 WP_124402205.1 5786882..5787289(-) (pilG) [Pseudomonas synxantha strain R2-4-08W]
MEQHSSALRVMVIDDSKTIRRTAETLLKNMGCEVITAIDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPTFK
TIPVIMLSSKDGLFDKAKGRIVGVDQFLTKPFSKEELLGAIKAYVPAFASVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=280205 C4K00_RS26475 WP_124402205.1 5786882..5787289(-) (pilG) [Pseudomonas synxantha strain R2-4-08W]
ATGGAACAGCATTCCAGCGCCTTGAGGGTAATGGTGATCGACGATTCGAAGACGATCCGCCGCACCGCCGAGACCCTGTT
GAAGAACATGGGGTGCGAGGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCGCGGATAGTGGATCATCACCCGCACA
TTATTTTTGTCGACATCATGATGCCGCGCCTGGATGGCTACCAGACCTGCGCCCTGGTGAAGAACAACCCGACGTTCAAG
ACGATCCCGGTGATCATGCTGTCCTCCAAGGATGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTGGGTGTCGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGGGTGCGATCAAGGCCTATGTGCCTGCCTTCGCCTCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.079

94.074

0.659

Multiple sequence alignment