Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   D9C08_RS08000 Genome accession   NZ_CP032872
Coordinates   1536374..1537090 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531374..1542090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS07970 (D9C08_07970) - 1531876..1532013 (+) 138 WP_072592513.1 hypothetical protein -
  D9C08_RS07975 (D9C08_07975) yflB 1532032..1532424 (+) 393 WP_003233692.1 DUF1992 domain-containing protein -
  D9C08_RS07980 (D9C08_07980) - 1532549..1532800 (+) 252 Protein_1503 sodium:alanine symporter family protein -
  D9C08_RS07985 (D9C08_07985) - 1532749..1533078 (-) 330 Protein_1504 spore germination protein -
  D9C08_RS07990 (D9C08_07990) treP 1533185..1534597 (+) 1413 WP_069837362.1 PTS system trehalose-specific EIIBC component -
  D9C08_RS07995 (D9C08_07995) treC 1534668..1536353 (+) 1686 WP_014479164.1 alpha,alpha-phosphotrehalase -
  D9C08_RS08000 (D9C08_08000) treR 1536374..1537090 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  D9C08_RS08005 (D9C08_08005) hypO 1537230..1537895 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=280203 D9C08_RS08000 WP_003233679.1 1536374..1537090(+) (treR) [Bacillus subtilis subsp. subtilis strain 2KL1]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=280203 D9C08_RS08000 WP_003233679.1 1536374..1537090(+) (treR) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment