Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C08_RS07525 Genome accession   NZ_CP032872
Coordinates   1440906..1442036 (+) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1435906..1447036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS07505 (D9C08_07505) yeeF 1435997..1438003 (-) 2007 WP_046380835.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  D9C08_RS07510 (D9C08_07510) - 1438170..1438508 (+) 339 WP_069837346.1 hypothetical protein -
  D9C08_RS07515 (D9C08_07515) - 1438521..1439441 (+) 921 WP_046380836.1 DUF5655 domain-containing protein -
  D9C08_RS07520 (D9C08_07520) - 1439598..1440758 (+) 1161 WP_069837347.1 lysozyme inhibitor LprI family protein -
  D9C08_RS07525 (D9C08_07525) rapC 1440906..1442036 (+) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  D9C08_RS07530 (D9C08_07530) phrH 1442026..1442199 (+) 174 WP_069837348.1 phosphatase RapH inhibitor PhrH -
  D9C08_RS07535 (D9C08_07535) yeeI 1442359..1443078 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  D9C08_RS07540 (D9C08_07540) yeeK 1443212..1443658 (+) 447 WP_046380839.1 spore coat protein YeeK -
  D9C08_RS07545 (D9C08_07545) yezE 1443773..1444357 (+) 585 WP_046380840.1 TetR/AcrR family transcriptional regulator -
  D9C08_RS07550 (D9C08_07550) yesE 1444437..1444883 (+) 447 WP_046380841.1 nuclear transport factor 2 family protein -
  D9C08_RS07555 (D9C08_07555) yesF 1444880..1445742 (+) 863 Protein_1418 NAD(P)H-binding protein -
  D9C08_RS07560 (D9C08_07560) cotJA 1445872..1446120 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  D9C08_RS07565 (D9C08_07565) cotJB 1446104..1446367 (+) 264 WP_003219491.1 spore coat protein CotJB -
  D9C08_RS07570 (D9C08_07570) cotJC 1446382..1446951 (+) 570 WP_014479096.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=280202 D9C08_RS07525 WP_014479091.1 1440906..1442036(+) (rapC) [Bacillus subtilis subsp. subtilis strain 2KL1]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=280202 D9C08_RS07525 WP_014479091.1 1440906..1442036(+) (rapC) [Bacillus subtilis subsp. subtilis strain 2KL1]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCAGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTAAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402

Multiple sequence alignment