Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K00_RS24330 Genome accession   NZ_CP027757
Coordinates   5340325..5341692 (-) Length   455 a.a.
NCBI ID   WP_046069598.1    Uniprot ID   A0A0R3AJL3
Organism   Pseudomonas synxantha strain R2-4-08W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5335325..5346692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K00_RS24310 (C4K00_4843) yjiA 5336259..5337218 (-) 960 WP_124413089.1 GTPase -
  C4K00_RS24315 (C4K00_4844) - 5337373..5337570 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  C4K00_RS24320 (C4K00_4845) - 5337586..5339652 (-) 2067 WP_057024512.1 carbon starvation CstA family protein -
  C4K00_RS24325 (C4K00_4846) - 5339828..5340196 (+) 369 WP_124413090.1 PilZ domain-containing protein -
  C4K00_RS24330 (C4K00_4847) radA 5340325..5341692 (-) 1368 WP_046069598.1 DNA repair protein RadA Machinery gene
  C4K00_RS24335 (C4K00_4848) - 5341728..5342267 (-) 540 WP_124413091.1 ankyrin repeat domain-containing protein -
  C4K00_RS24340 (C4K00_4849) - 5342326..5343867 (-) 1542 WP_124413092.1 catalase -
  C4K00_RS24345 (C4K00_4850) mscL 5344153..5344569 (+) 417 WP_043048461.1 large-conductance mechanosensitive channel protein MscL -
  C4K00_RS24350 (C4K00_4851) - 5344613..5345389 (-) 777 WP_124401957.1 ferredoxin--NADP reductase -
  C4K00_RS24355 (C4K00_4852) - 5345839..5346549 (+) 711 WP_124413093.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48820.33 Da        Isoelectric Point: 6.8987

>NTDB_id=280202 C4K00_RS24330 WP_046069598.1 5340325..5341692(-) (radA) [Pseudomonas synxantha strain R2-4-08W]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPQGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=280202 C4K00_RS24330 WP_046069598.1 5340325..5341692(-) (radA) [Pseudomonas synxantha strain R2-4-08W]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGTGGGGCTGCAGCGCCTACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCAGAAGTCAGTGTCGAAGAGATCCCGCGTTTCTCCACCGCCTCCGGTGAGTTG
GATCGCGTACTCGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGCAAGTCGACCAT
CCTATTGCAGACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCGCGGCGCCTGGGCTTGCCCCAGGACCAGCTGCGGGTCATGACTGAAACCTGCATCGAGAGCATTATCGCC
ACGGCGCGGATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTTACCGAGCAACTGCAATCAGCACC
GGGCGGCGTGTCCCAGGTGCGGGAAAGCGCGGCGCTGTTGGTGCGCTATGCCAAGCAGAGTGGCACGGCGATTTTCCTGG
TGGGGCATGTGACCAAGGAAGGCGCGCTGGCGGGGCCACGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGACGGTCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTGAATGAGCTGGGTGTGTTCGC
CATGACTGACCGTGGGCTGAAAGAAGTCTCCAACCCCTCGGCGATATTTCTCACTCGGGCCCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCGACGTGGGAGGGTACCCGGCCCATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTAGCC
AACCCGCGGCGGGTCACGCTCGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCGGTATTGCACCGCCACGGCGGTAT
CCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGTGTCAAGGTGTTGGAGACCGCTTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGTTGCCTCATGACCTGCTGGTGTTCGGTGAAGTGGGCTTGTCGGGT
GAAGTGCGCCCGGTGCCCAGCGGGCAGGAGCGGTTGAAGGAGGCAGCCAAGCATGGCTTCAAGCGCGCAATTGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCCCAGGGCTTGCAGGTGATTGGGGTGACACGCCTGGAGCAGGCGTTGGATGCATTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R3AJL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.841

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47

Multiple sequence alignment