Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C08_RS06440 Genome accession   NZ_CP032872
Coordinates   1234884..1235525 (+) Length   213 a.a.
NCBI ID   WP_014478974.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229884..1240525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS06410 (D9C08_06410) ydfE 1231080..1231703 (-) 624 WP_069837276.1 flavin reductase family protein -
  D9C08_RS06415 (D9C08_06415) ydfF 1231793..1232473 (+) 681 WP_003244115.1 winged helix-turn-helix domain-containing protein -
  D9C08_RS06420 (D9C08_06420) ydfG 1232554..1232995 (-) 442 Protein_1198 carboxymuconolactone decarboxylase family protein -
  D9C08_RS06425 (D9C08_06425) - 1233081..1233260 (-) 180 WP_010886421.1 hypothetical protein -
  D9C08_RS06430 (D9C08_06430) - 1233257..1233400 (-) 144 WP_014478971.1 hypothetical protein -
  D9C08_RS06435 (D9C08_06435) ydfH 1233668..1234891 (+) 1224 WP_033881070.1 two-component system sensor histidine kinase YdfH -
  D9C08_RS06440 (D9C08_06440) vraR 1234884..1235525 (+) 642 WP_014478974.1 two-component system response regulator YdfI Regulator
  D9C08_RS06445 (D9C08_06445) pleJ 1235641..1237815 (+) 2175 WP_069837277.1 MMPL family transporter -
  D9C08_RS06450 (D9C08_06450) - 1237945..1239297 (+) 1353 WP_014478984.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24004.93 Da        Isoelectric Point: 5.1938

>NTDB_id=280199 D9C08_RS06440 WP_014478974.1 1234884..1235525(+) (vraR) [Bacillus subtilis subsp. subtilis strain 2KL1]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=280199 D9C08_RS06440 WP_014478974.1 1234884..1235525(+) (vraR) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACGGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGACGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371