Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   D9C08_RS05900 Genome accession   NZ_CP032872
Coordinates   1145655..1146089 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140655..1151089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS05870 (D9C08_05870) ydaD 1141302..1142162 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  D9C08_RS05875 (D9C08_05875) lyxE 1142178..1142681 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  D9C08_RS05880 (D9C08_05880) ydaF 1142769..1143320 (+) 552 WP_014478866.1 GNAT family protein -
  D9C08_RS05885 (D9C08_05885) ydaG 1143398..1143820 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  D9C08_RS05890 (D9C08_05890) amj 1144326..1145135 (+) 810 WP_069837262.1 lipid II flippase Amj -
  D9C08_RS05895 (D9C08_05895) ydzA 1145180..1145470 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  D9C08_RS05900 (D9C08_05900) lrpC 1145655..1146089 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  D9C08_RS05905 (D9C08_05905) topB 1146154..1148337 (+) 2184 WP_069837263.1 DNA topoisomerase III -
  D9C08_RS05910 (D9C08_05910) mutT 1148450..1148899 (+) 450 WP_046160069.1 8-oxo-dGTP diphosphatase MutT -
  D9C08_RS05915 (D9C08_05915) poxB 1148966..1150690 (+) 1725 WP_046160070.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=280198 D9C08_RS05900 WP_003246585.1 1145655..1146089(+) (lrpC) [Bacillus subtilis subsp. subtilis strain 2KL1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=280198 D9C08_RS05900 WP_003246585.1 1145655..1146089(+) (lrpC) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1