Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C4K00_RS16730 Genome accession   NZ_CP027757
Coordinates   3734243..3734878 (-) Length   211 a.a.
NCBI ID   WP_043046641.1    Uniprot ID   A0A0D0SQV5
Organism   Pseudomonas synxantha strain R2-4-08W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3729243..3739878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K00_RS16695 (C4K00_3334) - 3729612..3730283 (+) 672 WP_046068609.1 Bax inhibitor-1/YccA family protein -
  C4K00_RS16700 (C4K00_3335) murB 3730357..3731376 (-) 1020 WP_124412546.1 UDP-N-acetylmuramate dehydrogenase -
  C4K00_RS16705 (C4K00_3336) - 3731373..3731837 (-) 465 WP_124401034.1 low molecular weight protein-tyrosine-phosphatase -
  C4K00_RS16710 (C4K00_3337) kdsB 3731837..3732601 (-) 765 WP_124412547.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C4K00_RS16715 (C4K00_3338) - 3732598..3732783 (-) 186 WP_003174668.1 Trm112 family protein -
  C4K00_RS16720 (C4K00_3339) lpxK 3732808..3733818 (-) 1011 WP_124412548.1 tetraacyldisaccharide 4'-kinase -
  C4K00_RS16725 (C4K00_3340) - 3733818..3734246 (-) 429 WP_043046643.1 ExbD/TolR family protein -
  C4K00_RS16730 (C4K00_3341) exbB 3734243..3734878 (-) 636 WP_043046641.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C4K00_RS16735 (C4K00_3342) comA 3734988..3737213 (-) 2226 WP_241197579.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C4K00_RS16740 (C4K00_3343) - 3737349..3737864 (+) 516 WP_124401037.1 DUF2062 domain-containing protein -
  C4K00_RS16745 (C4K00_3344) - 3737869..3739227 (-) 1359 WP_124401038.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22864.07 Da        Isoelectric Point: 7.3615

>NTDB_id=280195 C4K00_RS16730 WP_043046641.1 3734243..3734878(-) (exbB) [Pseudomonas synxantha strain R2-4-08W]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMATNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=280195 C4K00_RS16730 WP_043046641.1 3734243..3734878(-) (exbB) [Pseudomonas synxantha strain R2-4-08W]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCATTGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAACTCAAGGAACTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAGGAAGCGGCTGCGCGGGTGATCCATGAGCTTGAGCGTTACAT
CAACGCCCTTGGTACCATCGCCGCCATGGCACCGCTGCTCGGCCTGCTCGGCACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCGCGGGCATGGCGACCAACGCGGCGGTACTTGCCGGCGGCATTTCCAAGGCCTTGATCACCACGGCT
GCGGGCCTGATGGTGGGGATTCCCGCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0SQV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872

Multiple sequence alignment