Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C4K01_RS29295 Genome accession   NZ_CP027756
Coordinates   6306714..6308210 (+) Length   498 a.a.
NCBI ID   WP_057022719.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain R6-28-08     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6301714..6313210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K01_RS29265 (C4K01_5894) - 6302140..6302835 (+) 696 WP_057022721.1 HAD family hydrolase -
  C4K01_RS29270 (C4K01_5895) sutA 6303029..6303361 (-) 333 WP_043046902.1 transcriptional regulator SutA -
  C4K01_RS29275 (C4K01_5896) - 6303464..6303889 (-) 426 WP_057022720.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C4K01_RS29280 (C4K01_5897) - 6304099..6305436 (-) 1338 WP_043046900.1 ammonium transporter -
  C4K01_RS29285 (C4K01_5898) glnK 6305471..6305809 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C4K01_RS29290 (C4K01_5899) - 6306233..6306496 (+) 264 WP_046070065.1 accessory factor UbiK family protein -
  C4K01_RS29295 (C4K01_5900) comM 6306714..6308210 (+) 1497 WP_057022719.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C4K01_RS29300 (C4K01_5901) - 6308217..6308792 (-) 576 WP_057022718.1 TetR/AcrR family transcriptional regulator -
  C4K01_RS29305 (C4K01_5902) - 6308907..6309821 (+) 915 WP_057022717.1 ABC transporter six-transmembrane domain-containing protein -
  C4K01_RS29310 (C4K01_5903) - 6309825..6311801 (-) 1977 WP_057022716.1 methyl-accepting chemotaxis protein -
  C4K01_RS29315 (C4K01_5904) - 6311978..6312898 (-) 921 WP_057022715.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53524.79 Da        Isoelectric Point: 7.9190

>NTDB_id=280184 C4K01_RS29295 WP_057022719.1 6306714..6308210(+) (comM) [Pseudomonas synxantha strain R6-28-08]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYTSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLQPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPSQQI
GETTAQASAQVAQARERQQQRQGCANAFLDLPRLREHCLLAKADEYWLEAACERLTLSLRAAHRLLKVARTLADLEHVDS
IARHHLAEALQYRPAAIG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=280184 C4K01_RS29295 WP_057022719.1 6306714..6308210(+) (comM) [Pseudomonas synxantha strain R6-28-08]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGGTCGGCGTCGAAGCTCCTGCCGTCACCGTCGAGGTGCATATGGCTAA
TGGCCTGCCATCACTGACACTGGTGGGTTTGCCGGAGACGGCGGTGAAAGAGAGCAAAGACCGCGTGCGCAGTGCCATTT
TAAATTCGGCGCTGCAATACCCAGCACGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCGCTGGGGATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTTGATGCTCGATGAGGTGGAGTGCCT
GGGGGAGCTGGCGCTTTCCGGCGAGGTGCGGGCGGTGAAAGGCGTGCTGCCGGCAGCACTAGCAGCGCGCAAGGCTGGGC
GCACCGTGATAGTGCCCCGAGCCAATGCCGAGGAAGCGTGCCTGGCGTCTGGATTGAAAGTGATTGCCGTGGATCATTTG
CTGCAGGTGGTGGCGCACCTGAATGGACACGTGCCGATTGAACCGTACACATCCGACGGCCTGCTGTATTTGAACAAACC
CTACCCGGACCTGAGTGAGGTACAGGGCCAATTGGCGGCCAAGCGTGCGCTGCTGATCGCGGCGGCCGGTGCGCATAACC
TGTTGTTCAGTGGCCCCCCGGGCACCGGTAAGACCCTGCTCGCCAGCCGGCTGCCGGGCTTGCTGCCACCGTTGAGCGAG
CAGGAAGCCCTGGAAGTGGCAGCGATCCAATCCGTGGTCAGCCTCCAGCCCCTGAGTCATTGGCCTAACCGCCCGTTCCG
GCAACCGCACCATTCGGCATCCGGGCCGGCGCTGGTGGGTGGCGGCTCGAAGCCGCAACCGGGGGAAATCACCCTGGCCC
ACCACGGGGTGCTGTTCCTGGATGAACTGCCGGAGTTTGATCGTAAGGTGCTGGAAGTGCTGCGCGAGCCATTGGAGTCG
GGGCATATCGTGATCTCTCGAGCCCGTGACCGGGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCGGCGATGAACCCCTG
CCCTTGCGGCTACATGGGTGAGCCCAGTGGGCGTTGCCGGTGCACGCCGGAGCAAATCCAGCGCTATCGCAACAAGCTCT
CCGGGCCGTTGCTGGACCGCATTGACTTGCACCTGACGGTGGCCCGGGAGACCACTGCGCTGAACCCCTCCCAACAGATC
GGTGAAACCACCGCTCAGGCATCCGCCCAGGTAGCGCAAGCCCGCGAGCGTCAGCAACAACGCCAGGGCTGTGCCAATGC
GTTTCTCGACCTGCCGCGGCTGCGCGAACACTGCCTGCTGGCAAAAGCCGATGAATACTGGCTGGAGGCCGCGTGTGAAC
GGCTGACTTTATCCCTGCGCGCCGCACACCGGCTGCTCAAGGTAGCGCGCACGCTAGCGGACCTTGAGCATGTAGACAGC
ATCGCTCGCCATCATTTGGCAGAAGCCTTGCAGTACCGGCCGGCCGCAATTGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

55.888

100

0.562
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55.4

100

0.556
  comM Legionella pneumophila str. Paris

50.605

99.598

0.504
  comM Legionella pneumophila strain ERS1305867

50.605

99.598

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466

Multiple sequence alignment