Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K01_RS26175 Genome accession   NZ_CP027756
Coordinates   5659726..5661093 (-) Length   455 a.a.
NCBI ID   WP_046069598.1    Uniprot ID   A0A0R3AJL3
Organism   Pseudomonas synxantha strain R6-28-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5654726..5666093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K01_RS26155 (C4K01_5274) yjiA 5655720..5656679 (-) 960 WP_057024513.1 GTPase -
  C4K01_RS26160 (C4K01_5275) - 5656834..5657031 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  C4K01_RS26165 (C4K01_5276) - 5657047..5659113 (-) 2067 WP_057024512.1 carbon starvation CstA family protein -
  C4K01_RS26170 (C4K01_5277) - 5659289..5659657 (+) 369 WP_046069597.1 PilZ domain-containing protein -
  C4K01_RS26175 (C4K01_5278) radA 5659726..5661093 (-) 1368 WP_046069598.1 DNA repair protein RadA Machinery gene
  C4K01_RS26180 (C4K01_5279) - 5661129..5661668 (-) 540 WP_057024511.1 ankyrin repeat domain-containing protein -
  C4K01_RS26185 (C4K01_5280) katB 5661727..5663268 (-) 1542 WP_057024510.1 catalase KatB -
  C4K01_RS26190 (C4K01_5281) mscL 5663555..5663971 (+) 417 WP_043048461.1 large-conductance mechanosensitive channel protein MscL -
  C4K01_RS26195 (C4K01_5282) - 5664016..5664792 (-) 777 WP_057024509.1 ferredoxin--NADP reductase -
  C4K01_RS26200 (C4K01_5283) - 5665242..5665952 (+) 711 WP_057024508.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48820.33 Da        Isoelectric Point: 6.8987

>NTDB_id=280178 C4K01_RS26175 WP_046069598.1 5659726..5661093(-) (radA) [Pseudomonas synxantha strain R6-28-08]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPQGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=280178 C4K01_RS26175 WP_046069598.1 5659726..5661093(-) (radA) [Pseudomonas synxantha strain R6-28-08]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCAGGCCAGTGCTCCGAGTG
TGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGCGGGGCAGCAGCGCCTACTGGCCGCGCCGGCTGGACCG
GCCAACAGGCGCAGATCAAGACCCTGGCCGAGGTCAGTGTCGAAGAGATCCCGCGTTTCTCCACCGCCTCCGGTGAGCTG
GATCGCGTACTCGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATTGGTGGTGACCCAGGCATCGGCAAGTCGACCAT
CCTCTTGCAGACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACGGGCGAAGAGTCCCAGCAACAAGTGG
CCATGCGCGCCCGGCGCCTGGGCTTGCCCCAGGACCAGCTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATTGCC
ACGGCGCGGATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTTACCGAGCAATTACAATCGGCACC
GGGTGGCGTGTCCCAGGTGCGGGAAAGTGCGGCACTGCTGGTGCGCTATGCCAAGCAGAGTGGCACGGCGATCTTCCTGG
TGGGGCATGTGACCAAGGAAGGCGCGTTGGCCGGGCCAAGGGTGTTAGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGATGGTCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTGAACGAGCTGGGTGTGTTCGC
CATGACCGACCGAGGGCTGAAAGAGGTCTCCAATCCATCGGCGATTTTTCTGACCCGCGCCCAAGAAGAAGTCCCGGGCA
GTGTGGTGATGGCCACGTGGGAGGGCACCCGGCCAATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCGCGAAGGGTCACGCTCGGCCTGGACCAGAACCGTTTGGCGATGTTGCTGGCGGTATTGCACCGCCACGGCGGTAT
CCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGTTGCCTCACGACCTGCTGGTGTTCGGTGAAGTGGGCTTGTCGGGT
GAAGTGCGCCCGGTGCCCAGCGGGCAGGAGAGATTGAAGGAGGCAGCCAAGCATGGCTTCAAGCGTGCGATTGTGCCCAA
GGGTAATGCGCCGAAGGAAATGCCACAGGGCTTGCAGGTGATTGGGGTGACACGCCTGGAGCAGGCGTTGGATGCACTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R3AJL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.841

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47

Multiple sequence alignment