Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K02_RS25280 Genome accession   NZ_CP027755
Coordinates   5532027..5533394 (-) Length   455 a.a.
NCBI ID   WP_005791613.1    Uniprot ID   A0A7S7S4R6
Organism   Pseudomonas synxantha strain 2-79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5527027..5538394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K02_RS25260 (C4K02_5088) yjiA 5527967..5528926 (-) 960 WP_043048453.1 GTPase -
  C4K02_RS25265 (C4K02_5089) - 5529079..5529276 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  C4K02_RS25270 (C4K02_5090) - 5529292..5531358 (-) 2067 WP_043048455.1 carbon starvation CstA family protein -
  C4K02_RS25275 (C4K02_5091) - 5531534..5531902 (+) 369 WP_043048457.1 PilZ domain-containing protein -
  C4K02_RS25280 (C4K02_5092) radA 5532027..5533394 (-) 1368 WP_005791613.1 DNA repair protein RadA Machinery gene
  C4K02_RS25285 (C4K02_5093) - 5533430..5533969 (-) 540 WP_043048458.1 ankyrin repeat domain-containing protein -
  C4K02_RS25290 (C4K02_5094) - 5534027..5535568 (-) 1542 WP_043048459.1 catalase -
  C4K02_RS25295 (C4K02_5095) mscL 5535856..5536272 (+) 417 WP_043048461.1 large-conductance mechanosensitive channel protein MscL -
  C4K02_RS25300 (C4K02_5096) - 5536316..5537092 (-) 777 WP_043048463.1 ferredoxin--NADP reductase -
  C4K02_RS25305 (C4K02_5097) - 5537538..5538248 (+) 711 WP_043048464.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48763.28 Da        Isoelectric Point: 6.8987

>NTDB_id=280154 C4K02_RS25280 WP_005791613.1 5532027..5533394(-) (radA) [Pseudomonas synxantha strain 2-79]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=280154 C4K02_RS25280 WP_005791613.1 5532027..5533394(-) (radA) [Pseudomonas synxantha strain 2-79]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGCGGGGCTGCAGCGCCTACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCAGAAGTCAGTGTCGAAGAGATCCCGCGTTTCTCCACCGCCTCCGGTGAGTTG
GATCGCGTACTCGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGTGACCCAGGCATCGGCAAGTCGACCAT
CCTGTTGCAGACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCGCGGCGCCTGGGCTTGCCTCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATTGCC
ACGGCGCGGATCGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTTACTGAGCAACTGCAATCAGCACC
GGGCGGCGTGTCCCAGGTGCGGGAAAGTGCGGCGTTGTTGGTGCGCTATGCCAAGCAGAGTGGCACGGCGATTTTTCTGG
TCGGTCACGTAACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGACGGTCGCCTACGCTTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTGAACGAGTTGGGTGTGTTCGC
CATGACCGACCGCGGGCTTAAGGAAGTCTCCAATCCCTCAGCGATTTTTCTGACCCGCGCCCAAGAGGAAGTCCCGGGCA
GTGTGGTGATGGCAACATGGGAGGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGTCACCTGGCC
AACCCGCGACGGGTCACGCTCGGCCTGGACCAGAACCGTCTGGCGATGTTGCTGGCAGTATTGCACCGCCACGGTGGTAT
CCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGTGGTGTCAAGGTGTTGGAGACCGCTTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCACTACCTCACGACCTGCTGGTGTTCGGTGAAGTGGGCTTGTCGGGT
GAAGTGCGCCCGGTGCCCAGCGGGCAGGAGCGATTGAAGGAGGCAGCCAAGCACGGCTTCAAGCGCGCAATTGTGCCCAA
GGGCAATGCACCGAAGGAGATGCCGGCAGGTTTGCAGGTGATTGGAGTGACGCGCCTGGAGCAGGCGTTGGATGCACTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7S4R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47

Multiple sequence alignment