Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   D9C20_RS20690 Genome accession   NZ_CP032867
Coordinates   3876041..3877816 (-) Length   591 a.a.
NCBI ID   WP_014480018.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3871041..3882816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS20670 (D9C20_20670) desE 3871414..3872472 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  D9C20_RS20675 (D9C20_20675) desK 3872592..3873704 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  D9C20_RS20680 (D9C20_20680) desR 3873723..3874322 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  D9C20_RS20685 (D9C20_20685) walN 3874930..3875793 (-) 864 WP_014480017.1 3D domain-containing protein -
  D9C20_RS20690 (D9C20_20690) recQ 3876041..3877816 (-) 1776 WP_014480018.1 DNA helicase RecQ Machinery gene
  D9C20_RS20705 (D9C20_20705) azoJ 3878382..3879008 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  D9C20_RS20710 (D9C20_20710) stpP 3879161..3879652 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  D9C20_RS20715 (D9C20_20715) - 3879727..3880059 (-) 333 WP_014480020.1 hypothetical protein -
  D9C20_RS20720 (D9C20_20720) - 3880137..3880364 (+) 228 WP_014480021.1 hypothetical protein -
  D9C20_RS20725 (D9C20_20725) yocM 3880351..3880827 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  D9C20_RS20730 (D9C20_20730) - 3880894..3881157 (+) 264 WP_004399338.1 hypothetical protein -
  D9C20_RS20735 (D9C20_20735) - 3881162..3881395 (+) 234 WP_003231251.1 hypothetical protein -
  D9C20_RS20740 (D9C20_20740) yozO 3881489..3881833 (-) 345 WP_003220141.1 PH domain-containing protein -
  D9C20_RS20745 (D9C20_20745) yozC 3882189..3882392 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67373.82 Da        Isoelectric Point: 6.2902

>NTDB_id=280152 D9C20_RS20690 WP_014480018.1 3876041..3877816(-) (recQ) [Bacillus subtilis subsp. subtilis strain N4-2]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPNACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAADQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=280152 D9C20_RS20690 WP_014480018.1 3876041..3877816(-) (recQ) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGCCGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTCTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGTAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGATC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

DEAD/DEAH box helicase (DEAD)

(21-182)

HRDC domain (HRDC)

(518-583)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.154

100

0.992