Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   D9C20_RS20030 Genome accession   NZ_CP032867
Coordinates   3751609..3752226 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3746609..3757226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS20000 (D9C20_20000) yndJ 3746928..3748568 (+) 1641 WP_014479931.1 YndJ family protein -
  D9C20_RS20005 (D9C20_20005) - 3748658..3748972 (+) 315 Protein_3864 hypothetical protein -
  D9C20_RS20010 (D9C20_20010) pghL 3749197..3749955 (+) 759 WP_014479934.1 gamma-polyglutamate hydrolase PghL -
  D9C20_RS20015 (D9C20_20015) - 3749982..3750431 (-) 450 WP_014479935.1 YndM family protein -
  D9C20_RS20020 (D9C20_20020) fosM 3750640..3751059 (+) 420 WP_014479937.1 FosM family fosfomycin resistance protein -
  D9C20_RS23115 - 3750983..3751322 (+) 340 Protein_3868 hypothetical protein -
  D9C20_RS20030 (D9C20_20030) dinR/lexA 3751609..3752226 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  D9C20_RS20035 (D9C20_20035) yneA 3752376..3752693 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  D9C20_RS20040 (D9C20_20040) dinL 3752712..3753365 (+) 654 WP_014479938.1 recombinase family protein -
  D9C20_RS20045 (D9C20_20045) ynzC 3753429..3753662 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  D9C20_RS20050 (D9C20_20050) recP/tkt 3753831..3755834 (+) 2004 WP_014476936.1 transketolase Machinery gene
  D9C20_RS20055 (D9C20_20055) sirA 3755987..3756433 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  D9C20_RS20060 (D9C20_20060) yneF 3756519..3756737 (+) 219 WP_003221221.1 YneF family protein -
  D9C20_RS20065 (D9C20_20065) ynzD 3756811..3756984 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=280149 D9C20_RS20030 WP_003238209.1 3751609..3752226(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain N4-2]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=280149 D9C20_RS20030 WP_003238209.1 3751609..3752226(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGAGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCAATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1