Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   D9C20_RS18245 Genome accession   NZ_CP032867
Coordinates   3423111..3423560 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3418111..3428560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS18205 (D9C20_18205) ctaE 3418127..3418750 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  D9C20_RS18210 (D9C20_18210) ctaF 3418753..3419085 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  D9C20_RS18215 (D9C20_18215) ctaG 3419113..3420006 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  D9C20_RS18220 (D9C20_18220) ylbA 3420038..3420400 (-) 363 WP_014479712.1 YugN family protein -
  D9C20_RS18225 (D9C20_18225) ylbB 3420540..3420986 (+) 447 WP_003221362.1 CBS domain-containing protein -
  D9C20_RS18230 (D9C20_18230) ylbC 3421070..3422110 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  D9C20_RS18235 (D9C20_18235) ylbD 3422342..3422740 (+) 399 WP_003232233.1 YlbD family protein -
  D9C20_RS18240 (D9C20_18240) ylbE 3422756..3422995 (+) 240 WP_003232231.1 YlbE-like family protein -
  D9C20_RS18245 (D9C20_18245) ylbF 3423111..3423560 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  D9C20_RS18250 (D9C20_18250) ylbG 3423615..3423887 (+) 273 WP_009967171.1 YlbG family protein -
  D9C20_RS18255 (D9C20_18255) rsmD 3424210..3424764 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D9C20_RS18260 (D9C20_18260) coaD 3424769..3425254 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  D9C20_RS18265 (D9C20_18265) spoVV 3425265..3426491 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  D9C20_RS18270 (D9C20_18270) ylbK 3426672..3427454 (+) 783 WP_003232221.1 patatin family protein -
  D9C20_RS18275 (D9C20_18275) sepM 3427456..3428481 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=280134 D9C20_RS18245 WP_003221370.1 3423111..3423560(+) (ylbF) [Bacillus subtilis subsp. subtilis strain N4-2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=280134 D9C20_RS18245 WP_003221370.1 3423111..3423560(+) (ylbF) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1