Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K03_RS27440 Genome accession   NZ_CP027754
Coordinates   5916634..5918001 (-) Length   455 a.a.
NCBI ID   WP_046069598.1    Uniprot ID   A0A0R3AJL3
Organism   Pseudomonas synxantha strain 30B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5911634..5923001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K03_RS27420 (C4K03_5464) yjiA 5912658..5913614 (-) 957 WP_124379510.1 GTPase -
  C4K03_RS27425 (C4K03_5465) - 5913769..5913966 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  C4K03_RS27430 (C4K03_5466) - 5913982..5916048 (-) 2067 WP_057024512.1 carbon starvation CstA family protein -
  C4K03_RS27435 (C4K03_5467) - 5916223..5916592 (+) 370 Protein_5336 PilZ domain-containing protein -
  C4K03_RS27440 (C4K03_5468) radA 5916634..5918001 (-) 1368 WP_046069598.1 DNA repair protein RadA Machinery gene
  C4K03_RS27445 (C4K03_5469) - 5918037..5918576 (-) 540 WP_124379511.1 ankyrin repeat domain-containing protein -
  C4K03_RS27450 (C4K03_5471) - 5918635..5920112 (-) 1478 Protein_5339 catalase -
  C4K03_RS27455 (C4K03_5472) mscL 5920399..5920815 (+) 417 WP_057012810.1 large-conductance mechanosensitive channel protein MscL -
  C4K03_RS27460 (C4K03_5473) - 5920859..5921635 (-) 777 WP_124379512.1 ferredoxin--NADP reductase -
  C4K03_RS27465 (C4K03_5474) - 5922081..5922791 (+) 711 WP_124379513.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48820.33 Da        Isoelectric Point: 6.8987

>NTDB_id=280129 C4K03_RS27440 WP_046069598.1 5916634..5918001(-) (radA) [Pseudomonas synxantha strain 30B]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPQGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=280129 C4K03_RS27440 WP_046069598.1 5916634..5918001(-) (radA) [Pseudomonas synxantha strain 30B]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATCGAGAGTGGCGGGGCAGCAGCGCCTACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATAAAAACCCTGGCAGAAGTCAGTGTCGAAGAGATTCCGCGTTTCTCCACCGCCTCCGGTGAGTTG
GATCGCGTACTCGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGCAAGTCGACCAT
CCTCTTGCAGACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCGCGGCGCCTGGGCTTGCCTCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGGATCGAAAAGCCCAAGGTCATGGTAATCGACTCGATCCAGACGATTTTCACCGAGCAATTGCAATCGGCACC
GGGTGGGGTGTCCCAGGTGCGGGAAAGCGCGGCGCTGTTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGTCATGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGTTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGTGAATCCGACGGTCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTGAACGAGCTGGGTGTGTTCGC
CATGACCGACCGGGGGCTTAAGGAAGTCTCCAATCCCTCTGCGATTTTTCTCACCCGCGCCCAGGAAGAAGTCCCCGGCA
GTGTGGTGATGGCCACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGACGGGTCACGCTCGGCCTGGACCAGAACCGTCTGGCGATGTTGCTGGCGGTATTGCACCGCCACGGCGGTAT
CCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAAGTGCTGGAGACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCACTACCTCACGACCTGCTGGTGTTCGGTGAAGTGGGCTTGTCGGGT
GAAGTGCGTCCGGTGCCCAGCGGGCAGGAGCGATTGAAGGAGGCAGCCAAGCATGGCTTCAAGCGCGCAATTGTGCCCAA
AGGCAATGCACCGAAGGAGATGCCCCAGGGCTTGCAGGTGATTGGGGTGACACGCCTGGAGCAGGCGTTGGATGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R3AJL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.841

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47

Multiple sequence alignment