Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C20_RS16885 Genome accession   NZ_CP032867
Coordinates   3172450..3173586 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3167450..3178586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS16860 (D9C20_16860) yjnA 3168149..3168913 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  D9C20_RS16865 (D9C20_16865) bstD 3169132..3169596 (-) 465 WP_014479541.1 DinB family protein -
  D9C20_RS16870 (D9C20_16870) yjoB 3169745..3170845 (+) 1101 Protein_3238 ATPase YjoB -
  D9C20_RS16880 (D9C20_16880) - 3172132..3172305 (+) 174 Protein_3240 ATPase -
  D9C20_RS16885 (D9C20_16885) rapC 3172450..3173586 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  D9C20_RS16890 (D9C20_16890) phrA 3173576..3173710 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  D9C20_RS16895 (D9C20_16895) yjpA 3173741..3173987 (-) 247 Protein_3243 YciI family protein -
  D9C20_RS16900 (D9C20_16900) xlyB 3174108..3175061 (+) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  D9C20_RS16905 (D9C20_16905) yjqA 3175101..3175478 (-) 378 WP_014479546.1 PH domain-containing protein -
  D9C20_RS16910 (D9C20_16910) pghB 3175583..3176185 (+) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  D9C20_RS16915 (D9C20_16915) xpdC 3176262..3177098 (+) 837 WP_003245071.1 manganese catalase family protein -
  D9C20_RS16920 (D9C20_16920) xkdA 3177142..3177738 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  D9C20_RS16925 (D9C20_16925) xre 3177901..3178242 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=280124 D9C20_RS16885 WP_015252291.1 3172450..3173586(+) (rapC) [Bacillus subtilis subsp. subtilis strain N4-2]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=280124 D9C20_RS16885 WP_015252291.1 3172450..3173586(+) (rapC) [Bacillus subtilis subsp. subtilis strain N4-2]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418