Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K04_RS27770 Genome accession   NZ_CP027753
Coordinates   6055680..6057047 (-) Length   455 a.a.
NCBI ID   WP_124322405.1    Uniprot ID   A0A3G7TXY3
Organism   Pseudomonas chlororaphis strain B25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6050680..6062047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K04_RS27745 (C4K04_5639) - 6051519..6051716 (-) 198 WP_007930039.1 YbdD/YjiX family protein -
  C4K04_RS27750 (C4K04_5640) - 6051732..6053797 (-) 2066 Protein_5457 carbon starvation CstA family protein -
  C4K04_RS27755 (C4K04_5641) - 6054008..6054469 (+) 462 WP_124322402.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K04_RS27760 (C4K04_5642) - 6054528..6054896 (+) 369 WP_124322403.1 PilZ domain-containing protein -
  C4K04_RS27765 (C4K04_5643) - 6054922..6055650 (-) 729 WP_124322404.1 hypothetical protein -
  C4K04_RS27770 (C4K04_5644) radA 6055680..6057047 (-) 1368 WP_124322405.1 DNA repair protein RadA Machinery gene
  C4K04_RS27775 (C4K04_5645) - 6057093..6057641 (-) 549 WP_124322406.1 ankyrin repeat domain-containing protein -
  C4K04_RS27780 (C4K04_5646) katB 6057817..6059358 (-) 1542 WP_124322407.1 catalase KatB -
  C4K04_RS27785 (C4K04_5648) mscL 6059645..6060058 (+) 414 WP_009045733.1 large-conductance mechanosensitive channel protein MscL -
  C4K04_RS27790 (C4K04_5649) - 6060112..6060888 (-) 777 WP_124322408.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48852.36 Da        Isoelectric Point: 7.1317

>NTDB_id=280105 C4K04_RS27770 WP_124322405.1 6055680..6057047(-) (radA) [Pseudomonas chlororaphis strain B25]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAIRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPQGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=280105 C4K04_RS27770 WP_124322405.1 6055680..6057047(-) (radA) [Pseudomonas chlororaphis strain B25]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGTGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGTGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GCCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATCCCGCGCTTTTCCACGGCTTCCGGCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGTTACAGACCTTGTGCAACATCGCCATCCGCATGCCGGCGCTCTACGTCACAGGCGAGGAATCGCAGCAACAGGTGG
CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAGCTACGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAACTGCAATCGGCTCC
CGGTGGTGTCTCCCAGGTGCGTGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCCTGCGCTTGCTACGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGTGTGTTCGG
CATGACCGATCGCGGCTTGAAAGAGGTTTCCAACCCTTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGTACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGTGGGGTCAAGGTGCTGGAAACGGCGTCTGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCGGTGCCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAGCATGGCTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACAGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAACAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G7TXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459
  radA Streptococcus pneumoniae Rx1

45.833

100

0.459
  radA Streptococcus pneumoniae D39

45.833

100

0.459
  radA Streptococcus pneumoniae R6

45.833

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.833

100

0.459

Multiple sequence alignment