Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   D9C20_RS14180 Genome accession   NZ_CP032867
Coordinates   2675156..2675872 (+) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2670156..2680872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS14155 (D9C20_14155) - 2671065..2671337 (-) 273 Protein_2716 spore gernimation protein -
  D9C20_RS14165 (D9C20_14165) - 2671599..2671778 (-) 180 Protein_2717 spore germination protein -
  D9C20_RS14170 (D9C20_14170) treP 2671967..2673379 (+) 1413 WP_014479163.1 PTS system trehalose-specific EIIBC component -
  D9C20_RS14175 (D9C20_14175) treC 2673450..2675135 (+) 1686 WP_014479164.1 alpha,alpha-phosphotrehalase -
  D9C20_RS14180 (D9C20_14180) treR 2675156..2675872 (+) 717 WP_003233679.1 trehalose operon repressor Regulator
  D9C20_RS14185 (D9C20_14185) hypO 2676012..2676677 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=280100 D9C20_RS14180 WP_003233679.1 2675156..2675872(+) (treR) [Bacillus subtilis subsp. subtilis strain N4-2]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=280100 D9C20_RS14180 WP_003233679.1 2675156..2675872(+) (treR) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416