Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9C20_RS12990 Genome accession   NZ_CP032867
Coordinates   2430397..2431038 (+) Length   213 a.a.
NCBI ID   WP_014478974.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2425397..2436038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS12960 (D9C20_12960) ydfE 2426591..2427214 (-) 624 WP_014478968.1 flavin reductase family protein -
  D9C20_RS12965 (D9C20_12965) ydfF 2427304..2427984 (+) 681 WP_014478969.1 winged helix-turn-helix domain-containing protein -
  D9C20_RS12970 (D9C20_12970) ydfG 2428065..2428508 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  D9C20_RS12975 (D9C20_12975) - 2428594..2428773 (-) 180 WP_010886421.1 hypothetical protein -
  D9C20_RS12980 (D9C20_12980) - 2428770..2428913 (-) 144 WP_014478971.1 hypothetical protein -
  D9C20_RS12985 (D9C20_12985) ydfH 2429181..2430404 (+) 1224 WP_033881070.1 two-component system sensor histidine kinase YdfH -
  D9C20_RS12990 (D9C20_12990) vraR 2430397..2431038 (+) 642 WP_014478974.1 two-component system response regulator YdfI Regulator
  D9C20_RS12995 (D9C20_12995) pleJ 2431154..2433328 (+) 2175 WP_033881069.1 MMPL family transporter -
  D9C20_RS13000 (D9C20_13000) cesA 2433739..2434641 (-) 903 WP_014478976.1 carboxylesterase -
  D9C20_RS13005 (D9C20_13005) ydfK 2434844..2435533 (-) 690 WP_019712443.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24004.93 Da        Isoelectric Point: 5.1938

>NTDB_id=280097 D9C20_RS12990 WP_014478974.1 2430397..2431038(+) (vraR) [Bacillus subtilis subsp. subtilis strain N4-2]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=280097 D9C20_RS12990 WP_014478974.1 2430397..2431038(+) (vraR) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACGGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGACGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371