Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   D9C20_RS10180 Genome accession   NZ_CP032867
Coordinates   1905668..1905898 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1900668..1910898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS10150 (D9C20_10150) ridA 1900832..1901209 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  D9C20_RS10155 (D9C20_10155) spoVG 1901404..1901697 (+) 294 WP_003218346.1 septation regulator SpoVG -
  D9C20_RS10160 (D9C20_10160) glmU 1901890..1903260 (+) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  D9C20_RS10165 (D9C20_10165) prsS 1903283..1904236 (+) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  D9C20_RS10170 (D9C20_10170) rplYB 1904321..1904935 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  D9C20_RS10175 (D9C20_10175) pth 1905042..1905608 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  D9C20_RS10180 (D9C20_10180) subA/fin 1905668..1905898 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  D9C20_RS10185 (D9C20_10185) mfd 1905968..1909501 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  D9C20_RS10190 (D9C20_10190) spoVT 1909637..1910173 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=280080 D9C20_RS10180 WP_003243417.1 1905668..1905898(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain N4-2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=280080 D9C20_RS10180 WP_003243417.1 1905668..1905898(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment