Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   D9C20_RS09020 Genome accession   NZ_CP032867
Coordinates   1694592..1695281 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689592..1700281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS09000 (D9C20_09000) yxeA 1690521..1690868 (-) 348 WP_003227084.1 YxeA family protein -
  D9C20_RS09005 (D9C20_09005) yxdM 1690882..1692766 (-) 1885 Protein_1766 ABC transporter permease YxdM -
  D9C20_RS09010 (D9C20_09010) tpeL 1692741..1693474 (-) 734 Protein_1767 ABC transporter ATP-binding protein -
  D9C20_RS09015 (D9C20_09015) yxdK 1693618..1694595 (-) 978 WP_014481410.1 two-component system sensor histidine kinase YxdK -
  D9C20_RS09020 (D9C20_09020) braR 1694592..1695281 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  D9C20_RS09025 (D9C20_09025) iolJ 1695389..1696261 (-) 873 WP_014481411.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  D9C20_RS09030 (D9C20_09030) iolI 1696282..1697118 (-) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  D9C20_RS09035 (D9C20_09035) iolH 1697204..1698073 (-) 870 WP_014481413.1 sugar phosphate isomerase/epimerase -
  D9C20_RS09040 (D9C20_09040) iolG 1698093..1699127 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=280069 D9C20_RS09020 WP_003243527.1 1694592..1695281(-) (braR) [Bacillus subtilis subsp. subtilis strain N4-2]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=280069 D9C20_RS09020 WP_003243527.1 1694592..1695281(-) (braR) [Bacillus subtilis subsp. subtilis strain N4-2]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment