Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9C20_RS07425 Genome accession   NZ_CP032867
Coordinates   1383030..1384163 (-) Length   377 a.a.
NCBI ID   WP_014481175.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain N4-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378030..1389163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C20_RS07385 (D9C20_07385) ywnA 1378160..1378561 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  D9C20_RS07390 (D9C20_07390) ureC 1378696..1380405 (-) 1710 WP_014481168.1 urease subunit alpha -
  D9C20_RS07395 (D9C20_07395) ureB 1380402..1380776 (-) 375 WP_014481169.1 urease subunit beta -
  D9C20_RS07400 (D9C20_07400) ureA 1380773..1381090 (-) 318 WP_014478236.1 urease subunit gamma -
  D9C20_RS22630 - 1381284..1381442 (-) 159 WP_158332665.1 hypothetical protein -
  D9C20_RS23245 - 1381753..1381921 (-) 169 Protein_1450 urea ABC transporter substrate-binding protein -
  D9C20_RS07415 (D9C20_07415) csbD 1382134..1382322 (-) 189 WP_014481173.1 stress response protein CsbD -
  D9C20_RS07420 (D9C20_07420) - 1382395..1382874 (-) 480 WP_026113664.1 hypothetical protein -
  D9C20_RS07425 (D9C20_07425) rapC 1383030..1384163 (-) 1134 WP_014481175.1 response regulator aspartate phosphatase RapB Regulator
  D9C20_RS07435 (D9C20_07435) moaA 1384355..1385380 (-) 1026 WP_014481177.1 GTP 3',8-cyclase MoaA -
  D9C20_RS07440 (D9C20_07440) fdhD 1385396..1386184 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  D9C20_RS07445 (D9C20_07445) - 1386417..1386578 (-) 162 WP_003227706.1 hypothetical protein -
  D9C20_RS07450 (D9C20_07450) ywmD 1386673..1387347 (-) 675 WP_014481179.1 VWA domain-containing protein -
  D9C20_RS07455 (D9C20_07455) - 1387400..1387540 (-) 141 WP_014481180.1 hypothetical protein -
  D9C20_RS07460 (D9C20_07460) ywmC 1387671..1388354 (-) 684 WP_014481181.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.13 Da        Isoelectric Point: 4.7537

>NTDB_id=280062 D9C20_RS07425 WP_014481175.1 1383030..1384163(-) (rapC) [Bacillus subtilis subsp. subtilis strain N4-2]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=280062 D9C20_RS07425 WP_014481175.1 1383030..1384163(-) (rapC) [Bacillus subtilis subsp. subtilis strain N4-2]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422