Detailed information NTG0280026

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D9C20_RS01165
• Genome accession: NZ_CP032867
• Coordinates: 201896..203023 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain N4-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 196896..208023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C20_RS22790	-	196943..197155 (-)	213	Protein_226	recombinase family protein	-
D9C20_RS01145 (D9C20_01145)	fumC	197374..198762 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
D9C20_RS01150 (D9C20_01150)	-	198929..199819 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
D9C20_RS01155 (D9C20_01155)	-	200761..201156 (+)	396	WP_014480327.1	VOC family protein	-
D9C20_RS01165 (D9C20_01165)	rapC	201896..203023 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
D9C20_RS23140 (D9C20_01170)	-	203205..205131 (+)	1927	Protein_231	T7SS effector LXG polymorphic toxin	-
D9C20_RS01175 (D9C20_01175)	-	205145..205432 (+)	288	WP_014480331.1	hypothetical protein	-
D9C20_RS01185 (D9C20_01185)	-	205835..206275 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
D9C20_RS01190 (D9C20_01190)	-	206374..206826 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
D9C20_RS01195 (D9C20_01195)	cdiI	206923..207282 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
D9C20_RS01200 (D9C20_01200)	-	207387..207866 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=280026 D9C20_RS01165 WP_014480328.1 201896..203023(-) (rapC) [Bacillus subtilis subsp. subtilis strain N4-2]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=280026 D9C20_RS01165 WP_014480328.1 201896..203023(-) (rapC) [Bacillus subtilis subsp. subtilis strain N4-2]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397