Detailed information NTG0279982

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D9C18_RS18865
• Genome accession: NZ_CP032865
• Coordinates: 3546518..3547645 (+)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain N3-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3541518..3552645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9C18_RS18830 (D9C18_18830)	-	3541675..3542154 (-)	480	WP_224588637.1	hypothetical protein	-
D9C18_RS18835 (D9C18_18835)	cdiI	3542259..3542618 (-)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
D9C18_RS18840 (D9C18_18840)	-	3542715..3543167 (-)	453	WP_014480333.1	SMI1/KNR4 family protein	-
D9C18_RS18845 (D9C18_18845)	-	3543266..3543706 (-)	441	WP_014480332.1	SMI1/KNR4 family protein	-
D9C18_RS18855 (D9C18_18855)	-	3544109..3544396 (-)	288	WP_014480331.1	hypothetical protein	-
D9C18_RS23210 (D9C18_18860)	-	3544410..3546336 (-)	1927	Protein_3638	T7SS effector LXG polymorphic toxin	-
D9C18_RS18865 (D9C18_18865)	rapC	3546518..3547645 (+)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
D9C18_RS18875 (D9C18_18875)	-	3548385..3548780 (-)	396	WP_014480327.1	VOC family protein	-
D9C18_RS18880 (D9C18_18880)	-	3549722..3550612 (-)	891	WP_014480326.1	LysR family transcriptional regulator	-
D9C18_RS18885 (D9C18_18885)	fumC	3550779..3552167 (+)	1389	WP_014480325.1	class II fumarate hydratase	-
D9C18_RS23120	-	3552386..3552598 (+)	213	Protein_3643	recombinase family protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=279982 D9C18_RS18865 WP_014480328.1 3546518..3547645(+) (rapC) [Bacillus subtilis subsp. subtilis strain N3-1]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=279982 D9C18_RS18865 WP_014480328.1 3546518..3547645(+) (rapC) [Bacillus subtilis subsp. subtilis strain N3-1]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397