Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   XFASM12_RS01855 Genome accession   NC_010513
Coordinates   445808..446470 (+) Length   220 a.a.
NCBI ID   WP_004085189.1    Uniprot ID   Q9PEE9
Organism   Xylella fastidiosa M12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440808..451470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFASM12_RS01840 (Xfasm12_0384) - 441042..442283 (+) 1242 WP_004085192.1 lipoprotein-releasing ABC transporter permease subunit -
  XFASM12_RS01845 (Xfasm12_0385) lolD 442276..442998 (+) 723 WP_004085191.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  XFASM12_RS01850 (Xfasm12_0386) comA 443346..445823 (+) 2478 WP_012337634.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  XFASM12_RS01855 (Xfasm12_0387) exbB 445808..446470 (+) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  XFASM12_RS01860 (Xfasm12_0388) - 446475..446912 (+) 438 WP_004089267.1 biopolymer transporter ExbD -
  XFASM12_RS01865 (Xfasm12_0389) msbA 446930..448678 (+) 1749 WP_004085187.1 lipid A export permease/ATP-binding protein MsbA -
  XFASM12_RS01870 (Xfasm12_0390) lpxK 448675..449694 (+) 1020 WP_004085186.1 tetraacyldisaccharide 4'-kinase -
  XFASM12_RS01875 (Xfasm12_0391) - 450069..451151 (-) 1083 WP_012337635.1 phage late control D family protein -
  XFASM12_RS01880 (Xfasm12_0392) - 451142..451360 (-) 219 WP_004085341.1 tail protein X -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24000.41 Da        Isoelectric Point: 8.9727

>NTDB_id=27997 XFASM12_RS01855 WP_004085189.1 445808..446470(+) (exbB) [Xylella fastidiosa M12]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=27997 XFASM12_RS01855 WP_004085189.1 445808..446470(+) (exbB) [Xylella fastidiosa M12]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGACGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGCTATGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PEE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441

Multiple sequence alignment