Detailed information NTG0279966

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K10_RS08945
• Genome accession: NZ_CP027747
• Coordinates: 1980276..1982507 (+)
• Length: 743 a.a.
• NCBI ID: WP_038631108.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain 66
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1975276..1987507

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K10_RS08920 (C4K10_1795)	-	1976397..1977056 (+)	660	WP_038580923.1	transglutaminase family protein	-
C4K10_RS08925 (C4K10_1796)	-	1977099..1977722 (+)	624	WP_124339768.1	glutathione S-transferase	-
C4K10_RS08930 (C4K10_1797)	-	1977855..1978787 (+)	933	WP_009047814.1	ABC transporter ATP-binding protein	-
C4K10_RS08935 (C4K10_1798)	-	1978784..1979563 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K10_RS08940 (C4K10_1799)	-	1979612..1980127 (-)	516	WP_009047815.1	DUF2062 domain-containing protein	-
C4K10_RS08945 (C4K10_1800)	comA	1980276..1982507 (+)	2232	WP_038631108.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K10_RS08950 (C4K10_1801)	exbB	1982610..1983245 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K10_RS08955 (C4K10_1802)	-	1983242..1983670 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K10_RS08960 (C4K10_1803)	lpxK	1983670..1984680 (+)	1011	WP_124339769.1	tetraacyldisaccharide 4'-kinase	-
C4K10_RS08965 (C4K10_1804)	-	1984704..1984889 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K10_RS08970 (C4K10_1805)	kdsB	1984886..1985650 (+)	765	WP_028683135.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K10_RS08975 (C4K10_1806)	-	1985650..1986114 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K10_RS08980 (C4K10_1807)	murB	1986111..1987130 (+)	1020	WP_009047822.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81311.44 Da
• Isoelectric Point: 10.0461

>NTDB_id=279966 C4K10_RS08945 WP_038631108.1 1980276..1982507(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain 66]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATQESWRARIRQRLLQVDAQGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLALLAAQWPAWIAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWHWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279966 C4K10_RS08945 WP_038631108.1 1980276..1982507(+) (comA) [Pseudomonas chlororaphis subsp. aureofaciens strain 66]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTGGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGACGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGACTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGGCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGTGACGGCTCGGGGCTGAGCCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGTTACGGGTTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTCCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCCCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGTCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGTCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGGACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCCTGCTCTGGCTGGCCGGTGGTTTGCTGGATTTATTGTT
CCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCGTGGATAGCACCGGCCATACCGCTCTGGGCCTGGAGCATCAGTG
CGCTGGGGGCCTTTCTGCTGTTGTTGCCCGCGGGTGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAAACACGCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGGCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGTGATTCCGACCTGGGCGCCCGGGTAGTGCTGC
CATCGTTGCGTAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGCCAGCGGCGAGCAATGGCACTGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAATGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGACGCCCTGGCGGAG
CGCGCATTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCTTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACTGCCATTTACGACAGCGCGGAGCAAGGAGCGCTACGGTTGATGCTG
GGCACCTACACCGAACCGACGAGCCTGCGGGCGCAGCGACGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626