Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4K17_RS28025 Genome accession   NZ_CP027746
Coordinates   6202120..6203487 (-) Length   455 a.a.
NCBI ID   WP_007930034.1    Uniprot ID   A0AAX2EB22
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6197120..6208487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K17_RS28000 (C4K17_5689) - 6197959..6198156 (-) 198 WP_081359694.1 YbdD/YjiX family protein -
  C4K17_RS28005 (C4K17_5690) - 6198172..6200238 (-) 2067 WP_038575596.1 carbon starvation CstA family protein -
  C4K17_RS28010 (C4K17_5691) - 6200448..6200909 (+) 462 WP_038575595.1 isoprenylcysteine carboxylmethyltransferase family protein -
  C4K17_RS28015 (C4K17_5692) - 6200968..6201336 (+) 369 WP_023969440.1 PilZ domain-containing protein -
  C4K17_RS28020 (C4K17_5693) - 6201362..6202090 (-) 729 WP_081359693.1 hypothetical protein -
  C4K17_RS28025 (C4K17_5694) radA 6202120..6203487 (-) 1368 WP_007930034.1 DNA repair protein RadA Machinery gene
  C4K17_RS28030 (C4K17_5695) - 6203533..6204081 (-) 549 WP_038575592.1 ankyrin repeat domain-containing protein -
  C4K17_RS28035 (C4K17_5696) katB 6204154..6205695 (-) 1542 WP_009050970.1 catalase KatB -
  C4K17_RS28040 (C4K17_5697) mscL 6205982..6206395 (+) 414 WP_038575590.1 large-conductance mechanosensitive channel protein MscL -
  C4K17_RS28045 (C4K17_5698) - 6206449..6207225 (-) 777 WP_081359692.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48809.29 Da        Isoelectric Point: 7.1317

>NTDB_id=279951 C4K17_RS28025 WP_007930034.1 6202120..6203487(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=279951 C4K17_RS28025 WP_007930034.1 6202120..6203487(-) (radA) [Pseudomonas chlororaphis subsp. aurantiaca strain DSM 19603]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCCGCGGCCCCCAGCGGTCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATTCCACGCTTTTCCACGGCTTCCGGCGAGCTG
GACCGGGTGCTCGGTGGCGGTCTGGTCGACGGTTCGGTGGTGCTGATTGGCGGCGACCCGGGGATCGGCAAGTCGACCAT
TCTGCTGCAGACCTTGTGCAACATCGCCACCCGCATGCCAGCGCTCTACGTCACCGGCGAAGAATCGCAGCAACAGGTGG
CGATGCGTGCCCGGCGCCTGGGCCTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCCCGGCAGGAGAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAATTGCAATCGGCCCC
TGGCGGGGTTTCCCAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGGGTCCTCGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGTGAGTCCGACGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGATCGCGGCCTGAAAGAGGTTTCCAACCCGTCGGCGATCTTTCTCACCCGTGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACCTGGCC
AATCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCACGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTACGCCCAGTACCGAGCGGCCAGGAGCGCCTCAAGGAGGCGGCCAAACACGGTTTCAAACGGGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAGCCGCCACCGGGCTTGCGGATCATTGCGGTAACCCGTCTGGAACAGGCGCTGGATGCGCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459

Multiple sequence alignment