Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   XFASM12_RS00600 Genome accession   NC_010513
Coordinates   148933..149607 (-) Length   224 a.a.
NCBI ID   WP_011097508.1    Uniprot ID   Q87F21
Organism   Xylella fastidiosa M12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 143933..154607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFASM12_RS00585 (Xfasm12_0122) - 145440..146201 (-) 762 WP_004085514.1 SDR family NAD(P)-dependent oxidoreductase -
  XFASM12_RS00590 (Xfasm12_0123) - 146329..147075 (-) 747 WP_004085513.1 SPOR domain-containing protein -
  XFASM12_RS00595 (Xfasm12_0124) argS 147118..148806 (-) 1689 WP_012337565.1 arginine--tRNA ligase -
  XFASM12_RS00600 (Xfasm12_0125) radC 148933..149607 (-) 675 WP_011097508.1 DNA repair protein RadC Machinery gene
  XFASM12_RS00605 (Xfasm12_0126) coaBC 149705..150934 (+) 1230 WP_004085510.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  XFASM12_RS00610 (Xfasm12_0127) dut 150931..151398 (+) 468 WP_004085509.1 dUTP diphosphatase -
  XFASM12_RS00615 - 151412..153775 (+) 2364 WP_004085508.1 phosphomannomutase/phosphoglucomutase -
  XFASM12_RS00620 (Xfasm12_0129) - 153788..154465 (-) 678 WP_012337567.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24590.10 Da        Isoelectric Point: 8.2711

>NTDB_id=27995 XFASM12_RS00600 WP_011097508.1 148933..149607(-) (radC) [Xylella fastidiosa M12]
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARAC
KLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRR
ALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=27995 XFASM12_RS00600 WP_011097508.1 148933..149607(-) (radC) [Xylella fastidiosa M12]
ATGCACATCAACAACTGGCCTACGCATGAACGACCACGTGAAAAACTGCTGGCCCACGGTGCCGCCACACTTTCGGATGC
AGAACTGCTCGCAATCTTCCTAGGCTCCGGCCTACGCGGTCATGACGCCGTGCAAACTGCACGTAACCTGCTGCACACTC
ATGGTCCACTACGAGAACTGCTGGACCGACCTCCAGGTGATCTCATGCGCCTGCCCGGGTTAGGTCTGGCACGCGCATGC
AAACTCACCGCAGCACTGGAATTAAGCACCCGCCACCTGGCAGCCGCCCTGCAACGCGGCGCAAGTATCCACGATCCAAT
CAGCGCCGGACGCTATTTCGCACAGCGCCTACGAGCGAATCCAAATGAAGTCTTCGCCGTCCTATTTTTAGACAATAGGC
ACCGCGCGATCAGCTTTGAAGAATTGTTCCACGGCACCATCAACGGTGCCGAAGTACATCCACGCGAAGTCGTACGACGC
GCATTAACTCTGAACGCAGCGGCAGTGATCGTCGGCCATAATCACCCATCCGGTAACCGCGAACCATCACCAGCCGACCA
AATGATCACCCAACGCTTGAAAAACGCCTTAGACCTCATCGACGTGCGCCTAGTAGACCACTTCGTGATTGGCGACGGTG
CGCCGGTCTCATTCGCCGAACATGGCTGGCTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87F21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.662

95.089

0.415