Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   D9C18_RS11000 Genome accession   NZ_CP032865
Coordinates   2054263..2054952 (+) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2049263..2059952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS10980 (D9C18_10980) iolG 2050417..2051451 (+) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -
  D9C18_RS10985 (D9C18_10985) iolH 2051471..2052340 (+) 870 WP_014481413.1 sugar phosphate isomerase/epimerase -
  D9C18_RS10990 (D9C18_10990) iolI 2052426..2053262 (+) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  D9C18_RS10995 (D9C18_10995) iolJ 2053283..2054155 (+) 873 WP_014481411.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  D9C18_RS11000 (D9C18_11000) braR 2054263..2054952 (+) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  D9C18_RS11005 (D9C18_11005) yxdK 2054949..2055926 (+) 978 WP_014481410.1 two-component system sensor histidine kinase YxdK -
  D9C18_RS11010 (D9C18_11010) tpeL 2056070..2056803 (+) 734 Protein_2102 ABC transporter ATP-binding protein -
  D9C18_RS11015 (D9C18_11015) yxdM 2056778..2058662 (+) 1885 Protein_2103 ABC transporter permease YxdM -
  D9C18_RS11020 (D9C18_11020) yxeA 2058676..2059023 (+) 348 WP_003227084.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=279939 D9C18_RS11000 WP_003243527.1 2054263..2054952(+) (braR) [Bacillus subtilis subsp. subtilis strain N3-1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=279939 D9C18_RS11000 WP_003243527.1 2054263..2054952(+) (braR) [Bacillus subtilis subsp. subtilis strain N3-1]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment