Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   D9C18_RS09820 Genome accession   NZ_CP032865
Coordinates   1842252..1842482 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain N3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1837252..1847482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C18_RS09810 (D9C18_09810) spoVT 1837977..1838513 (-) 537 WP_003218365.1 stage V sporulation protein T -
  D9C18_RS09815 (D9C18_09815) mfd 1838649..1842182 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  D9C18_RS09820 (D9C18_09820) subA/fin 1842252..1842482 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  D9C18_RS09825 (D9C18_09825) pth 1842542..1843108 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  D9C18_RS09830 (D9C18_09830) rplYB 1843215..1843829 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  D9C18_RS09835 (D9C18_09835) prsS 1843914..1844867 (-) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  D9C18_RS09840 (D9C18_09840) glmU 1844890..1846260 (-) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  D9C18_RS09845 (D9C18_09845) spoVG 1846453..1846746 (-) 294 WP_003218346.1 septation regulator SpoVG -
  D9C18_RS09850 (D9C18_09850) ridA 1846941..1847318 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=279928 D9C18_RS09820 WP_003243417.1 1842252..1842482(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain N3-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=279928 D9C18_RS09820 WP_003243417.1 1842252..1842482(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain N3-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment