Detailed information NTG0279914

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: C4K19_RS09225
• Genome accession: NZ_CP027744
• Coordinates: 1994793..1997024 (+)
• Length: 743 a.a.
• NCBI ID: WP_124310675.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain M71
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1989793..2002024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K19_RS09200 (C4K19_1858)	-	1990914..1991573 (+)	660	WP_038580923.1	transglutaminase family protein	-
C4K19_RS09205 (C4K19_1859)	-	1991616..1992239 (+)	624	WP_124310674.1	glutathione S-transferase	-
C4K19_RS09210 (C4K19_1860)	-	1992372..1993304 (+)	933	WP_053268526.1	ABC transporter ATP-binding protein	-
C4K19_RS09215 (C4K19_1861)	-	1993301..1994080 (+)	780	WP_007931651.1	ABC transporter permease	-
C4K19_RS09220 (C4K19_1862)	-	1994129..1994644 (-)	516	WP_038580916.1	DUF2062 domain-containing protein	-
C4K19_RS09225 (C4K19_1863)	comA	1994793..1997024 (+)	2232	WP_124310675.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
C4K19_RS09230 (C4K19_1864)	exbB	1997127..1997762 (+)	636	WP_009047817.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
C4K19_RS09235 (C4K19_1865)	-	1997759..1998187 (+)	429	WP_009047818.1	biopolymer transporter ExbD	-
C4K19_RS09240 (C4K19_1866)	lpxK	1998187..1999197 (+)	1011	WP_124310676.1	tetraacyldisaccharide 4'-kinase	-
C4K19_RS09245 (C4K19_1867)	-	1999221..1999406 (+)	186	WP_007931663.1	Trm112 family protein	-
C4K19_RS09250 (C4K19_1868)	kdsB	1999403..2000167 (+)	765	WP_124310677.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C4K19_RS09255 (C4K19_1869)	-	2000167..2000631 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
C4K19_RS09260 (C4K19_1870)	murB	2000628..2001647 (+)	1020	WP_124310678.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81232.38 Da
• Isoelectric Point: 9.9468

>NTDB_id=279914 C4K19_RS09225 WP_124310675.1 1994793..1997024(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain M71]
MRTGMLALAAGLLSLRFLPALPALGWLAVLPVVALMLLPFRTYALALFLLGLTWACVSAQWALDDRLPEPLDGQTRWLEG
RVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPLHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLVAAEGGWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYVL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNTVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWVAPAIPLWAWSISALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRLGDSDLGARVVLPSLRKLGVERLDLMLLSHADADHAGGA
DAVQRGLPVARLVSGDPEGLPAYLPAEPCVSGEQWQWDGVRFSLWQWTDAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GSYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=279914 C4K19_RS09225 WP_124310675.1 1994793..1997024(+) (comA) [Pseudomonas chlororaphis subsp. aurantiaca strain M71]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGCTCGGATGGCT
GGCCGTGTTGCCGGTAGTGGCCTTGATGCTGCTGCCGTTTCGCACCTATGCATTGGCACTTTTTCTGTTGGGCCTGACGT
GGGCTTGCGTCAGTGCGCAATGGGCGCTGGACGATCGTTTGCCGGAACCGCTCGATGGACAGACCCGCTGGCTTGAGGGC
CGGGTAGTGGGATTGCCGCAGCAGGCCGAGGGCGTGCTGCGTTTCGAACTGGAAGGCGGGCGGGCTCGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGCTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGTCCCGCTGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGTATTGGCGCCACGGGC
ACGGTCAAGGATGGGCAACTGCTGGTTGCCGCTGAGGGTGGCTGGCGTGCGCGTATTCGCCAGCGCTTGCTGCAGGTCGA
TGCCCATGGGCGCGCCGGTGGCCTGGCGGCCCTGGTGCTGGGCGACGGCTCGGGGCTGAGCCGGGAAGACTGGCGTGTCC
TGCAAGACACCGGGACCGTGCATTTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTACGTCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGCTTCGACGTGCCGGTGCGTCGCGCCTGTGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCATTTCTGCTGGCGTTGAATACGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTATCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGTCTGGGAGG
TTGGCGCTGGTGGCAATCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGCTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGATGTGCTGTT
TCGCGGTCTGGCGCTATTGGCTGCCCAATGGCCGGCATGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGTATCAGTG
CGCTGGGAGCCTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGTTGTTGATGGTG
TTTCCGCCGAAAAACACCCTGCCATACGGCGAGGCGGAAGTCTGGCAACTGGATGTCGGGCAGGGGCTGGCGGTACTGGT
GCGGACTCGCGAGCACGCAATGCTGTACGACGCCGGCCCGCGTTTGGGTGACTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCCTTGCGCAAGCTGGGCGTCGAGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCTGGTGGCGCC
GACGCCGTCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGTGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
GCCTTGCGTCAGCGGCGAGCAATGGCAATGGGACGGAGTACGGTTTTCTTTGTGGCAATGGACGGATGCGCAGAACGGCA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGTTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGCGCGTTGCTGGATACCCCGCTGGCCGTCGAGACCCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATTTCCCGCGGGCACGGCAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAAGGAGCGCTAAGGTTGATGCTG
GGCAGCTACACCGAACCGACGAGCCTGAGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.534	96.77	0.624